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Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00770 map00770] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_met__L EX_met__L] == |
− | * common_name: | + | * direction: |
− | ** Pantothenate and CoA biosynthesis | + | ** LEFT-TO-RIGHT |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''20''' reactions found over '''75''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ACHBS]] | + | ** 1.0 [[met__L]][e] '''=>''' |
− | ** 0 associated gene:
| + | * With common name(s): |
− | ** 1 reconstruction source(s) associated: | + | ** 1.0 L-Methionine[e] '''=>''' |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[ACLS]]
| + | == Genes associated with this reaction == |
− | ** 1 associated gene(s): | + | == Pathways == |
− | *** [[B471_RS0108550]]
| + | == Reconstruction information == |
− | ** 1 reconstruction source(s) associated: | + | * Category: [[manual]] |
− | *** [[orthology-cljungdahlii]]
| + | ** Source: [[manual-missing_rxn_creator]] |
− | * [[ACPS1]]
| + | *** Comment: [[reaction from orthology templates not found by pantograph]] |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0105475]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[ASP1DC]] | + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0116125]]
| + | |
− | ** 2 reconstruction source(s) associated: | + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[DHAD1]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0117830]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[DHAD2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0117830]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[DPCOAK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0118270]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[DPR]]
| + | |
− | ** 3 associated gene(s):
| + | |
− | *** [[B471_RS24295]]
| + | |
− | *** [[B471_RS22435]]
| + | |
− | *** [[B471_RS0112620]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[DURAD]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0103590]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[ILETA]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[B471_RS0110105]]
| + | |
− | *** [[B471_RS0102340]]
| + | |
− | *** [[B471_RS0106435]]
| + | |
− | *** [[B471_RS0109150]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[KARA1]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108535]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[KARA2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108535]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[MOHMT]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108380]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PANTS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101070]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PNTK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0107805]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PPCDC]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0109325]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PPNCL]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0109325]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[PPNCL2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0109325]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PTPATi]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[VALTA]] | + | |
− | ** 4 associated gene(s): | + | |
− | *** [[B471_RS0109150]]
| + | |
− | *** [[B471_RS0110105]]
| + | |
− | *** [[B471_RS0106435]]
| + | |
− | *** [[B471_RS0102340]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | == Reaction(s) not found ==
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/56DH5FLURAAMH 56DH5FLURAAMH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5FLURAOR 5FLURAOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACPS1_1 ACPS1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACPS1h ACPS1h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACPpds ACPpds]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AFLBURPPAAMH AFLBURPPAAMH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APCPT APCPT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APNPT APNPT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APPAT APPAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BUPN BUPN]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHAD1m DHAD1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHAD2m DHAD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHAD_3mob_h DHAD_3mob_h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHADh DHADh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHPD DHPD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHPM1 DHPM1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHPM2 DHPM2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DMORh DMORh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DNADDP DNADDP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DPCOAKm DPCOAKm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DPCOAPP DPCOAPP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DPRm DPRm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DURAD2 DURAD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DURADx DURADx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FADDP FADDP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KARA1im KARA1im]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KARA2im KARA2im]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmb KARI_23dhmb]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmp KARI_23dhmp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTMOHT MTMOHT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NADDP NADDP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NADDPe NADDPe]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NADDPp NADDPp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NPH NPH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PBAL PBAL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PBALm PBALm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PNCDC PNCDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PNORn PNORn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PNTEH PNTEH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PNTKm PNTKm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPNCL3 PPNCL3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTPATim PTPATim]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/UDPGP UDPGP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/UDPGPpp UDPGPpp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/UPPN UPPN]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Pantothenate and CoA biosynthesis}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: reaction found=20}} | + | {{#set: in pathway=}} |
− | {{#set: total reaction=75}} | + | {{#set: reconstruction category=manual}} |
− | {{#set: completion rate=27.0}} | + | {{#set: reconstruction source=manual-missing_rxn_creator}} |
| + | {{#set: reconstruction comment=reaction from orthology templates not found by pantograph}} |