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Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/PCYT_AFE PCYT_AFE] == |
− | * common_name: | + | * direction: |
− | ** Carbon fixation in photosynthetic organisms | + | ** LEFT-TO-RIGHT |
| + | * common name: |
| + | ** phosphatidate cytidylyltransferase |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''18''' reactions found over '''71''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ASPTA]] | + | ** 1.0 [[ctp]][c] '''+''' 1.0 [[dag3pi_AFE]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[cdpdag_AFE]][c] |
− | ** 1 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0109180]]
| + | ** 1.0 CTP C9H12N3O14P3[c] '''+''' 1.0 1,2-Diacyl-sn-glycerol_3-phosphate-AFE[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 CDP-di-acyl-glycerol-AFE[c] |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | == Genes associated with this reaction == |
− | *** [[orthology-bsubtilis]]
| + | Genes have been associated with this reaction based on different elements listed below. |
− | *** [[orthology-aferrooxidans]]
| + | * Gene: [[B471_RS0100745]] |
− | * [[FBA]]
| + | ** Source: [[orthology-aferrooxidans]] |
− | ** 2 associated gene(s):
| + | == Pathways == |
− | *** [[B471_RS0118210]]
| + | == Reconstruction information == |
− | *** [[B471_RS0101615]]
| + | * Category: [[orthology]] |
− | ** 3 reconstruction source(s) associated:
| + | ** Source: [[orthology-aferrooxidans]] |
− | *** [[orthology-cljungdahlii]]
| + | *** Tool: [[pantograph]] |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[FBA2]]
| + | |
− | ** 1 associated gene(s): | + | |
− | *** [[B471_RS0101615]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[FBA3]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[FBP]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[GAPD]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119330]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GAPDi_nadp]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119330]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[MDH]] | + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108660]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[ME1]]
| + | |
− | ** 1 associated gene(s): | + | |
− | *** [[B471_RS0101695]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[ME2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108665]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[PGK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119325]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PPDK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0118720]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PRUK]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS23885]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[RPE]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS23765]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[RPI]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0116940]]
| + | |
− | *** [[B471_RS0116500]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[TKT1]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108290]] | + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]] | + | |
− | * [[TKT2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108290]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[TPI]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119320]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | == Reaction(s) not found == | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALATA_L ALATA_L] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GAPDH_nadp_hi GAPDH_nadp_hi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GAPDHf GAPDHf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GAPDHh GAPDHh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GAPDHm GAPDHm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGKf PGKf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGKh PGKh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGKm PGKm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PRUK_1 PRUK_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBP SBP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBP_1 SBP_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Carbon fixation in photosynthetic organisms}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: reaction found=18}} | + | {{#set: common name=phosphatidate cytidylyltransferase}} |
− | {{#set: total reaction=71}} | + | {{#set: gene associated=B471_RS0100745}} |
− | {{#set: completion rate=25.0}} | + | {{#set: in pathway=}} |
| + | {{#set: reconstruction category=orthology}} |
| + | {{#set: reconstruction source=orthology-aferrooxidans}} |
| + | {{#set: reconstruction tool=pantograph}} |
Genes have been associated with this reaction based on different elements listed below.