Difference between revisions of "BTCOARx CUT"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] == * common_name: ** Pyruvate metabolism * Synonym(s): == Reaction(s) found == ''...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/BTCOARx_CUT BTCOARx_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With...")
 
Line 1: Line 1:
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/BTCOARx_CUT BTCOARx_CUT] ==
−
* common_name:
+
* direction:
−
** Pyruvate metabolism
+
** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''22''' reactions found over '''163''' reactions in the full pathway
+
* With identifiers:
−
* [[ABUTD]]
+
** 1.0 [[btcoa]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''<=>''' 1.0 [[nad]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[btal]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[B471_RS0119455]]
+
** 1.0 Butanoyl-CoA[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 Butanal C4H8O[c]
−
*** [[B471_RS0115620]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[orthology-bsubtilis]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ACACT1r]]
+
* Gene: [[B471_RS0100095]]
−
** 1 associated gene(s):
+
** Source: [[manual-missing_rxn_creator]]
−
*** [[B471_RS0105350]]
+
* Gene: [[B471_RS0110020]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[manual-missing_rxn_creator]]
−
*** [[orthology-bsubtilis]]
+
* Gene: [[B471_RS0115620]]
−
* [[ACACT2r]]
+
** Source: [[manual-missing_rxn_creator]]
−
** 2 associated gene(s):
+
* Gene: [[B471_RS0119455]]
−
*** [[B471_RS0110565]]
+
** Source: [[manual-missing_rxn_creator]]
−
*** [[B471_RS0115615]]
+
* Gene: [[B471_RS0113260]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[manual-missing_rxn_creator]]
−
*** [[orthology-bsubtilis]]
+
== Pathways  ==
−
* [[ACACT3r]]
+
== Reconstruction information  ==
−
** 2 associated gene(s):
+
* Category: [[manual]]
−
*** [[B471_RS0110565]]
+
** Source: [[manual-missing_rxn_creator]]
−
*** [[B471_RS0115615]]
+
*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT4r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT7r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACALD]]
+
−
** 5 associated gene(s):
+
−
*** [[B471_RS0100095]]
+
−
*** [[B471_RS0110020]]
+
−
*** [[B471_RS0119455]]
+
−
*** [[B471_RS0113260]]
+
−
*** [[B471_RS0115620]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[ACCOAC]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0108400]]
+
−
*** [[B471_RS0108915]]
+
−
*** [[B471_RS0101860]]
+
−
*** [[B471_RS0108925]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ACS]]
+
−
** 3 associated gene(s):
+
−
*** [[B471_RS0108000]]
+
−
*** [[B471_RS0102585]]
+
−
*** [[B471_RS0101560]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ALDD2x]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115620]]
+
−
*** [[B471_RS0119455]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[FUM]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0102435]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[IPPS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS21670]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[LCADi]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115620]]
+
−
*** [[B471_RS0119455]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MACCOAT]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MALS]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[MDH]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108660]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ME1]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0101695]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[ME2]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108665]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[PC]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0103275]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[PDH]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0115310]]
+
−
*** [[B471_RS0115315]]
+
−
*** [[B471_RS0110920]]
+
−
*** [[B471_RS0110905]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[PPDK]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0118720]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[PYK]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0109145]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2HBO 2HBO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAL ACCOAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAH ACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAHim ACOAHim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACPh ACPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACYP ACYP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACYP_2 ACYP_2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGPOP AGPOP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGPOPm AGPOPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD2xm ALDD2xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD2y ALDD2y]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD2ym ALDD2ym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALR ALR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APhi APhi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DAPOP DAPOP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMALRED DMALRED]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDx GLYCLTDx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDy GLYCLTDy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYOX3 GLYOX3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GTPOPm GTPOPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LALDO2x LALDO2x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LALDO3 LALDO3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCADi_D LCADi_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCADi_Dm LCADi_Dm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_D LDH_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_L LDH_L]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDHm LDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LO LO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/L_LACD2 L_LACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/L_LACD3 L_LACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/L_LACDcm L_LACDcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LacR LacR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOSDC MOSDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MOX MOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OAADC OAADC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OBTFL OBTFL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHa PDHa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam1hi PDHam1hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam1mi PDHam1mi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam2hi PDHam2hi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHam2mi PDHam2mi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHbr PDHbr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe2hr PDHe2hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe2r PDHe2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHm PDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PEPCKm PEPCKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFL PFL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCSCT PPCSCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK2 PYK2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK3 PYK3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK4 PYK4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYK5 PYK5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYKf PYKf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYKm PYKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Pyruvate metabolism}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reaction found=22}}
+
{{#set: gene associated=B471_RS0100095|B471_RS0110020|B471_RS0115620|B471_RS0119455|B471_RS0113260}}
−
{{#set: total reaction=163}}
+
{{#set: in pathway=}}
−
{{#set: completion rate=13.0}}
+
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}

Latest revision as of 16:38, 21 March 2018

Reaction BTCOARx_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Butanoyl-CoA[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 H+[c] <=> 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Coenzyme A[c] + 1.0 Butanal C4H8O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=BTCOARx_CUT&oldid=7573"