Difference between revisions of "5mthf"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SHKK SHKK] == * direction: ** LEFT-TO-RIGHT * common name: ** Shikimate kinase * Synonym(s): == Re...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK2 NDPK2] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:UDP...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/SHKK SHKK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK2 NDPK2] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Shikimate kinase
+
** Nucleoside-diphosphate kinase (ATP:UDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[skm]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[skm5p]][c]
+
** 1.0 [[udp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[utp]][c] '''+''' 1.0 [[adp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Shikimate[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 Shikimate 5-phosphate[c]
+
** 1.0 UDP C9H11N2O12P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 UTP C9H11N2O15P3[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS20350]]
+
* [[B471_RS0100900]]
−
** [[pantograph]]-[[cljungdahlii]]
+
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[aferrooxidans]]
 
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 
** '''148''' reactions found over '''694''' reactions in the full pathway
−
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 
−
** '''17''' reactions found over '''59''' reactions in the full pathway
 
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
** '''68''' reactions found over '''244''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''64''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-aferrooxidans]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.7.1.71
 
−
* BioCyc : META:SHIKIMATE-KINASE-RXN
 
−
* MetaNetX (MNX) Equation : MNXR104379
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13121 13121]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25098 25098]
−
* Reactome : REACT_R-MTU-964939
+
* EC Number : 2.7.4.6
−
* KEGG Reaction : R02412
+
* MetaNetX (MNX) Equation : MNXR101935
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* KEGG Reaction : R00156
−
{{#set: common name=Shikimate kinase}}
+
* BioCyc : META:UDPKIN-RXN
−
{{#set: gene associated=B471_RS20350}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:UDP)}}
 +
{{#set: gene associated=B471_RS0100900}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00240|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Revision as of 00:32, 21 March 2018

Reaction NDPK2

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:UDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 UDP C9H11N2O12P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 UTP C9H11N2O15P3[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.7.4.6
  • MetaNetX (MNX) Equation : MNXR101935
  • KEGG Reaction : R00156
  • BioCyc : META:UDPKIN-RXN




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