Difference between revisions of "DALAt2r CUT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP7 PUNP7] == * direction: ** REVERSIBLE * common name: ** Purine-nucleoside phosphorylase (Xanth...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DALAt2r_CUT DALAt2r_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP7 PUNP7] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DALAt2r_CUT DALAt2r_CUT] ==
 
* direction:
 
* direction:
** REVERSIBLE
+
** LEFT-TO-RIGHT
* common name:
+
** Purine-nucleoside phosphorylase (Xanthosine)
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[pi]][c] '''+''' 1.0 [[xtsn]][c] '''<=>''' 1.0 [[r1p]][c] '''+''' 1.0 [[xan]][c]
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** 1.0 [[ala__D]][e] '''+''' 1.0 [[h]][e] '''=>''' 1.0 [[ala__D]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Phosphate[c] '''+''' 1.0 Xanthosine[c] '''<=>''' 1.0 Alpha-D-Ribose 1-phosphate[c] '''+''' 1.0 Xanthine[c]
+
** 1.0 D-Alanine[e] '''+''' 1.0 H+[e] '''=>''' 1.0 D-Alanine[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0100890]]
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* Gene: [[B471_RS0105160]]
** [[pantograph]]-[[cljungdahlii]]
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** Source: [[manual-missing_rxn_creator]]
** [[pantograph]]-[[bsubtilis]]
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* Gene: [[B471_RS0101195]]
 +
** Source: [[manual-missing_rxn_creator]]
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
** '''68''' reactions found over '''244''' reactions in the full pathway
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
** '''64''' reactions found over '''298''' reactions in the full pathway
 
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
 
** '''17''' reactions found over '''97''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
*** [[cljungdahlii]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27638 27638]
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{{#set: gene associated=B471_RS0105160|B471_RS0101195}}
* BioCyc : META:XANTHOSINEPHOSPHORY-RXN
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{{#set: in pathway=}}
* MetaNetX (MNX) Equation : MNXR103349
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{{#set: reconstruction category=manual}}
* KEGG Reaction : R02297
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{{#set: reconstruction source=manual-missing_rxn_creator}}
* EC Number : 2.4.2.-
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: direction=REVERSIBLE}}
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{{#set: common name=Purine-nucleoside phosphorylase (Xanthosine)}}
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{{#set: gene associated=B471_RS0100890}}
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{{#set: in pathway=map01100|map00240|map01110|map00230|map00760}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=cljungdahlii|bsubtilis}}
+

Latest revision as of 16:40, 21 March 2018

Reaction DALAt2r_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Alanine[e] + 1.0 H+[e] => 1.0 D-Alanine[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links