Difference between revisions of "DAPDC"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/G3PD2 G3PD2] == * direction: ** REVERSIBLE * common name: ** Glycerol-3-phosphate dehydrogenase (NA...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Diaminopimelate decarboxylase * Syn...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/G3PD2 G3PD2] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DAPDC DAPDC] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycerol-3-phosphate dehydrogenase (NADP)
+
** Diaminopimelate decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[glyc3p]][c] '''+''' 1.0 [[nadp]][c] '''<=>''' 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[dhap]][c]
+
** 1.0 [[26dap__M]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[lys__L]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Glycerol 3-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 Dihydroxyacetone phosphate[c]
+
** 1.0 Meso-2,6-Diaminoheptanedioate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 L-Lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0100985]]
+
* Gene: [[B471_RS0101130]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
−
** [[pantograph]]-[[aferrooxidans]]
+
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''36''' reactions found over '''134''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''10''' reactions found over '''34''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11096 11096]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
−
* MetaNetX (MNX) Equation : MNXR99877
+
* EC Number : 4.1.1.20
−
* KEGG Reaction : R00844
+
* MetaNetX (MNX) Equation : MNXR97141
−
* EC Number : 1.1.1.94
+
* KEGG Reaction : R00451
−
{{#set: direction=REVERSIBLE}}
+
* BioCyc : META:DIAMINOPIMDECARB-RXN
−
{{#set: common name=Glycerol-3-phosphate dehydrogenase (NADP)}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=B471_RS0100985}}
+
{{#set: common name=Diaminopimelate decarboxylase}}
−
{{#set: in pathway=map00564|map01110}}
+
{{#set: gene associated=B471_RS0101130}}
 +
{{#set: in pathway=map01100|map01110|map00300|map01120|map01230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii}}
 

Latest revision as of 16:39, 21 March 2018

Reaction DAPDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Diaminopimelate decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Meso-2,6-Diaminoheptanedioate[c] + 1.0 H+[c] => 1.0 CO2 CO2[c] + 1.0 L-Lysine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1.20
  • MetaNetX (MNX) Equation : MNXR97141
  • KEGG Reaction : R00451
  • BioCyc : META:DIAMINOPIMDECARB-RXN




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