Difference between revisions of "DDPA"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051] == * common_name: ** Fructose and mannose metabolism * Synonym(s): == Reaction(s)...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DDPA DDPA] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-deoxy-D-arabino-heptulosonate 7-pho...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DDPA DDPA] ==
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* common_name:
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* direction:
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** Fructose and mannose metabolism
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** LEFT-TO-RIGHT
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* common name:
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** 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''11''' reactions found over '''63''' reactions in the full pathway
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* With identifiers:
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* [[FBA]]
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** 1.0 [[h2o]][c] '''+''' 1.0 [[pep]][c] '''+''' 1.0 [[e4p]][c] '''=>''' 1.0 [[2dda7p]][c] '''+''' 1.0 [[pi]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[B471_RS0118210]]
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** 1.0 H2O H2O[c] '''+''' 1.0 Phosphoenolpyruvate[c] '''+''' 1.0 D-Erythrose 4-phosphate[c] '''=>''' 1.0 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate[c] '''+''' 1.0 Phosphate[c]
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*** [[B471_RS0101615]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* Gene: [[B471_RS0109435]]
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*** [[orthology-aferrooxidans]]
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** Source: [[orthology-cljungdahlii]]
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* [[FBA2]]
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** Source: [[orthology-bsubtilis]]
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** 1 associated gene(s):
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS0101615]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[orthology-bsubtilis]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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* [[FBA3]]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** 0 associated gene:
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** '''148''' reactions found over '''694''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
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*** [[manual-reaction_to_add_delete]]
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** '''17''' reactions found over '''59''' reactions in the full pathway
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* [[FBP]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** 0 associated gene:
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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*** [[manual-reaction_to_add_delete]]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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* [[FRUK]]
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== Reconstruction information  ==
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** 3 associated gene(s):
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* Category: [[orthology]]
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*** [[B471_RS0110295]]
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** Source: [[orthology-cljungdahlii]]
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*** [[B471_RS0117105]]
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*** Tool: [[pantograph]]
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*** [[B471_RS22465]]
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** Source: [[orthology-bsubtilis]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-cljungdahlii]]
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** Source: [[orthology-aferrooxidans]]
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* [[MAN1PT2]]
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*** Tool: [[pantograph]]
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** 1 associated gene(s):
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*** [[B471_RS0107610]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[MAN6PI]]
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** 1 associated gene(s):
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*** [[B471_RS0107610]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aferrooxidans]]
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* [[PFK]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[RPI]]
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** 2 associated gene(s):
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*** [[B471_RS0116940]]
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*** [[B471_RS0116500]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[SBTD_D2]]
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** 2 associated gene(s):
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*** [[B471_RS0106740]]
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*** [[B471_RS0115645]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[TPI]]
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** 1 associated gene(s):
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*** [[B471_RS0119320]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/ABFPT ABFPT]
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* [http://bigg.ucsd.edu/universal/reactions/ABFPTh ABFPTh]
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* [http://bigg.ucsd.edu/universal/reactions/ABTDG ABTDG]
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* [http://bigg.ucsd.edu/universal/reactions/ADPGLC ADPGLC]
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* [http://bigg.ucsd.edu/universal/reactions/ADPMAN ADPMAN]
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* [http://bigg.ucsd.edu/universal/reactions/AF1PT AF1PT]
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* [http://bigg.ucsd.edu/universal/reactions/AGAKI AGAKI]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD22_L ALCD22_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALLK ALLK]
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* [http://bigg.ucsd.edu/universal/reactions/AM6PTh AM6PTh]
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* [http://bigg.ucsd.edu/universal/reactions/ARABR ARABR]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/F1PGT F1PGT]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBA4 FBA4]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FCI FCI]
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* [http://bigg.ucsd.edu/universal/reactions/FCLK FCLK]
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* [http://bigg.ucsd.edu/universal/reactions/FCLPA FCLPA]
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* [http://bigg.ucsd.edu/universal/reactions/FK FK]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/GALOR GALOR]
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* [http://bigg.ucsd.edu/universal/reactions/GDPMNP GDPMNP]
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* [http://bigg.ucsd.edu/universal/reactions/GFUCS GFUCS]
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* [http://bigg.ucsd.edu/universal/reactions/GMAND GMAND]
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* [http://bigg.ucsd.edu/universal/reactions/GOFUCR GOFUCR]
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* [http://bigg.ucsd.edu/universal/reactions/HEX4 HEX4]
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* [http://bigg.ucsd.edu/universal/reactions/HEX7 HEX7]
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* [http://bigg.ucsd.edu/universal/reactions/KHK KHK]
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* [http://bigg.ucsd.edu/universal/reactions/M1PD M1PD]
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* [http://bigg.ucsd.edu/universal/reactions/MAN1PT MAN1PT]
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* [http://bigg.ucsd.edu/universal/reactions/MNLDH2 MNLDH2]
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* [http://bigg.ucsd.edu/universal/reactions/MPAKI MPAKI]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_2 PFK_2]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_ppi PFK_ppi]
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* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
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* [http://bigg.ucsd.edu/universal/reactions/PMANM PMANM]
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* [http://bigg.ucsd.edu/universal/reactions/RMI RMI]
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* [http://bigg.ucsd.edu/universal/reactions/RMK RMK]
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* [http://bigg.ucsd.edu/universal/reactions/RMPA RMPA]
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* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
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* [http://bigg.ucsd.edu/universal/reactions/SBTD_L SBTD_L]
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* [http://bigg.ucsd.edu/universal/reactions/SBTPD SBTPD]
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* [http://bigg.ucsd.edu/universal/reactions/SBTRh SBTRh]
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* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
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* [http://bigg.ucsd.edu/universal/reactions/TRIOK TRIOK]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI1 XYLI1]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI2 XYLI2]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Fructose and mannose metabolism}}
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* RHEA:
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{{#set: reaction found=11}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14717 14717]
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{{#set: total reaction=63}}
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* EC Number : 2.5.1.54
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{{#set: completion rate=17.0}}
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* MetaNetX (MNX) Equation : MNXR97218
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* KEGG Reaction : R01826
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* BioCyc : META:DAHPSYN-RXN
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase}}
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{{#set: gene associated=B471_RS0109435}}
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{{#set: in pathway=map01100|map01130|map00400|map01110|map01230}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:38, 21 March 2018

Reaction DDPA

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 Phosphoenolpyruvate[c] + 1.0 D-Erythrose 4-phosphate[c] => 1.0 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.5.1.54
  • MetaNetX (MNX) Equation : MNXR97218
  • KEGG Reaction : R01826
  • BioCyc : META:DAHPSYN-RXN




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