Difference between revisions of "DRBK CUT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS161 3OAS161] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-[acyl-carrier-protein...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DRBK_CUT DRBK_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS161 3OAS161] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DRBK_CUT DRBK_CUT] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
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** REVERSIBLE
* common name:
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** 3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h]][c] '''+''' 1.0 [[malACP]][c] '''+''' 1.0 [[tdeACP]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[3ocpalm9eACP]][c] '''+''' 1.0 [[ACP]][c]
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** 1.0 [[drib]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[2dr5p]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H+[c] '''+''' 1.0 Malonyl-[acyl-carrier protein][c] '''+''' 1.0 Cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 3-oxo-cis-palm-9-eoyl-[acyl-carrier protein][c] '''+''' 1.0 Acyl carrier protein[c]
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** 1.0 Deoxyribose C5H10O4[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 2-Deoxy-D-ribose 5-phosphate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0109650]]
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* Gene: [[B471_RS0117105]]
** [[pantograph]]-[[cljungdahlii]]
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** Source: [[manual-missing_rxn_creator]]
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00780]]: [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780]
 
** '''28''' reactions found over '''67''' reactions in the full pathway
 
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
 
** '''54''' reactions found over '''160''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
*** [[cljungdahlii]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
* MetaNetX (MNX) Equation : MNXR94960
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{{#set: direction=REVERSIBLE}}
* EC Number : 2.3.1.41
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{{#set: gene associated=B471_RS0117105}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: in pathway=}}
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1)}}
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{{#set: reconstruction category=manual}}
{{#set: gene associated=B471_RS0109650}}
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{{#set: reconstruction source=manual-missing_rxn_creator}}
{{#set: in pathway=map01100|map00780|map00061}}
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=cljungdahlii}}
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Latest revision as of 16:37, 21 March 2018

Reaction DRBK_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Deoxyribose C5H10O4[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 2-Deoxy-D-ribose 5-phosphate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links