Difference between revisions of "DXPRIi"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380] == * common_name: ** Tryptophan metabolism * Synonym(s): == Reaction(s) found ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DXPRIi DXPRIi] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-D-xylulose reductoisomera...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00380 map00380] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DXPRIi DXPRIi] ==
−
* common_name:
+
* direction:
−
** Tryptophan metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 1-deoxy-D-xylulose reductoisomerase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''11''' reactions found over '''163''' reactions in the full pathway
+
* With identifiers:
−
* [[ABUTD]]
+
** 1.0 [[nadph]][c] '''+''' 1.0 [[dxyl5p]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[2me4p]][c] '''+''' 1.0 [[nadp]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[B471_RS0119455]]
+
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
−
*** [[B471_RS0115620]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[orthology-bsubtilis]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ACACT1r]]
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* Gene: [[B471_RS0100735]]
−
** 1 associated gene(s):
+
** Source: [[orthology-bsubtilis]]
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*** [[B471_RS0105350]]
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** Source: [[orthology-aferrooxidans]]
−
** 1 reconstruction source(s) associated:
+
== Pathways  ==
−
*** [[orthology-bsubtilis]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
* [[ACACT2r]]
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
** 2 associated gene(s):
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
−
*** [[B471_RS0110565]]
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** '''148''' reactions found over '''694''' reactions in the full pathway
−
*** [[B471_RS0115615]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** 1 reconstruction source(s) associated:
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
*** [[orthology-bsubtilis]]
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* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
−
* [[ACACT3r]]
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** '''16''' reactions found over '''67''' reactions in the full pathway
−
** 2 associated gene(s):
+
== Reconstruction information  ==
−
*** [[B471_RS0110565]]
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* Category: [[orthology]]
−
*** [[B471_RS0115615]]
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** Source: [[orthology-bsubtilis]]
−
** 1 reconstruction source(s) associated:
+
*** Tool: [[pantograph]]
−
*** [[orthology-bsubtilis]]
+
** Source: [[orthology-aferrooxidans]]
−
* [[ACACT4r]]
+
*** Tool: [[pantograph]]
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT7r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ASPO1]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS23075]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ECOAH1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ECOAH9ir]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115580]]
+
−
*** [[B471_RS0110785]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[HACD1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[MACCOAT]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HAO 3HAO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HKYNAKGAT 3HKYNAKGAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HLYTCL 3HLYTCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNDCL 3HXKYNDCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HLTDL 5HLTDL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTO2OX 5HOXINDACTO2OX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HTRPDOX 5HTRPDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNDCL 5HXKYNDCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSOMT ACSOMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSRTNMT ACSRTNMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD26xi ALCD26xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD26xim ALCD26xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AM6SAD AM6SAD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CAT CAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CITALALDOR CITALALDOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HDC HDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HISDC HISDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HKYNH HKYNH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/INDPYRD INDPYRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KYN KYN]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KYN3OX KYN3OX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KYNAKGAT KYNAKGAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LFORKYNHYD LFORKYNHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LIDOMO LIDOMO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LTDCL LTDCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MELATN23DOX MELATN23DOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE NTRLASE]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE2 NTRLASE2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NTRLASE3 NTRLASE3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/P4503A43r P4503A43r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCLAD PCLAD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPYRDC PPYRDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/QUILSYN QUILSYN]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RAHY RAHY]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SRTN23OX SRTN23OX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SRTNACT SRTNACT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SRTNMTX SRTNMTX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPAS2 TRPAS2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPO2 TRPO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPTA TRPTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Tryptophan metabolism}}
+
* RHEA:
−
{{#set: reaction found=11}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
−
{{#set: total reaction=163}}
+
* EC Number : 1.1.1.267
−
{{#set: completion rate=7.0}}
+
* MetaNetX (MNX) Equation : MNXR97830
 +
* KEGG Reaction : R05688
 +
* BioCyc : META:DXPREDISOM-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=1-deoxy-D-xylulose reductoisomerase}}
 +
{{#set: gene associated=B471_RS0100735}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00900}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:37, 21 March 2018

Reaction DXPRIi

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-D-xylulose reductoisomerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 1-deoxy-D-xylulose 5-phosphate[c] + 1.0 H+[c] => 1.0 2-C-methyl-D-erythritol 4-phosphate[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.1.1.267
  • MetaNetX (MNX) Equation : MNXR97830
  • KEGG Reaction : R05688
  • BioCyc : META:DXPREDISOM-RXN




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=DXPRIi&oldid=7483"