Difference between revisions of "DXPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP3 PUNP3] == * direction: ** REVERSIBLE * common name: ** Purine-nucleoside phosphorylase (Guano...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-D-xylulose 5-phosphate syntha...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PUNP3 PUNP3] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DXPS DXPS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Purine-nucleoside phosphorylase (Guanosine)
+
** 1-deoxy-D-xylulose 5-phosphate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gsn]][c] '''+''' 1.0 [[pi]][c] '''<=>''' 1.0 [[gua]][c] '''+''' 1.0 [[r1p]][c]
+
** 1.0 [[pyr]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[g3p]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[dxyl5p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Guanosine[c] '''+''' 1.0 Phosphate[c] '''<=>''' 1.0 Guanine[c] '''+''' 1.0 Alpha-D-Ribose 1-phosphate[c]
+
** 1.0 Pyruvate[c] '''+''' 1.0 H+[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 1-deoxy-D-xylulose 5-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0100890]]
+
* Gene: [[B471_RS0101820]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
** [[pantograph]]-[[bsubtilis]]
+
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''471''' reactions found over '''2349''' reactions in the full pathway
 
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
−
** '''64''' reactions found over '''298''' reactions in the full pathway
+
** '''8''' reactions found over '''24''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 +
** '''16''' reactions found over '''67''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-cljungdahlii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-bsubtilis]]
 
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13233 13233]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
−
* EC Number : 2.4.2.1
+
* EC Number : 2.2.1.7
−
* MetaNetX (MNX) Equation : MNXR103345
+
* MetaNetX (MNX) Equation : MNXR97831
−
* KEGG Reaction : R02147
+
* KEGG Reaction : R05636
−
* BioCyc : META:RXN0-5199
+
* BioCyc : META:DXS-RXN
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Purine-nucleoside phosphorylase (Guanosine)}}
+
{{#set: common name=1-deoxy-D-xylulose 5-phosphate synthase}}
−
{{#set: gene associated=B471_RS0100890}}
+
{{#set: gene associated=B471_RS0101820}}
−
{{#set: in pathway=map01100|map00230}}
+
{{#set: in pathway=map01100|map00730|map01110|map01130|map00900}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
+
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:36, 21 March 2018

Reaction DXPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-D-xylulose 5-phosphate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyruvate[c] + 1.0 H+[c] + 1.0 Glyceraldehyde 3-phosphate[c] => 1.0 CO2 CO2[c] + 1.0 1-deoxy-D-xylulose 5-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.2.1.7
  • MetaNetX (MNX) Equation : MNXR97831
  • KEGG Reaction : R05636
  • BioCyc : META:DXS-RXN




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