Difference between revisions of "EX galur"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] == * common_name: ** Glyoxylate and dicarboxylate metabolism * Synonym(s): == Reac...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_galur EX_galur] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
 
Line 1: Line 1:
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/EX_galur EX_galur] ==
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* common_name:
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* direction:
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** Glyoxylate and dicarboxylate metabolism
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** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''23''' reactions found over '''129''' reactions in the full pathway
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* With identifiers:
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* [[ACACT1r]]
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** 1.0 [[galur]][e] '''=>'''
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** 1 associated gene(s):
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* With common name(s):
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*** [[B471_RS0105350]]
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** 1.0 D-Galacturonate[e] '''=>'''
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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== Genes associated with this reaction  ==
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* [[ACACT2r]]
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== Pathways  ==
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** 2 associated gene(s):
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== Reconstruction information  ==
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*** [[B471_RS0110565]]
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* Category: [[manual]]
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*** [[B471_RS0115615]]
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** Source: [[manual-missing_rxn_creator]]
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** 1 reconstruction source(s) associated:
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*** Comment: [[reaction from orthology templates not found by pantograph]]
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*** [[orthology-bsubtilis]]
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* [[ACACT3r]]
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** 2 associated gene(s):
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*** [[B471_RS0110565]]
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*** [[B471_RS0115615]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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* [[ACACT4r]]
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** 2 associated gene(s):
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*** [[B471_RS0110565]]
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*** [[B471_RS0115615]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[ACACT7r]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
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*** [[B471_RS0110565]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[ACONT]]
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** 1 associated gene(s):
+
−
*** [[B471_RS0105965]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[ACONTa]]
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** 1 associated gene(s):
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−
*** [[B471_RS0105965]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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−
*** [[orthology-aferrooxidans]]
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* [[ACONTb]]
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** 1 associated gene(s):
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−
*** [[B471_RS0105965]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[CS]]
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** 1 associated gene(s):
+
−
*** [[B471_RS0109275]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[ECOAH1]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[FTHFD]]
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** 1 associated gene(s):
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−
*** [[B471_RS0103250]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[GCALDD]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0115620]]
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−
*** [[B471_RS0119455]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[GHMT2r]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0101930]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[GLNS]]
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−
** 4 associated gene(s):
+
−
*** [[B471_RS0118305]]
+
−
*** [[B471_RS0113160]]
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−
*** [[B471_RS0117560]]
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−
*** [[B471_RS0113155]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[GLXCL]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
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−
* [[GLYCK]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS21900]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
*** [[orthology-bsubtilis]]
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−
* [[GLYCTO1]]
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−
** 7 associated gene(s):
+
−
*** [[B471_RS0100385]]
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−
*** [[B471_RS0103425]]
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−
*** [[B471_RS0100380]]
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*** [[B471_RS21575]]
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*** [[B471_RS0100405]]
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*** [[B471_RS21905]]
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*** [[B471_RS23835]]
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** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[MACCOAT]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
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*** [[B471_RS0110565]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MALS]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
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−
* [[MDH]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0108660]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[PGLYCP]]
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−
** 3 associated gene(s):
+
−
*** [[B471_RS0117485]]
+
−
*** [[B471_RS21140]]
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−
*** [[B471_RS0117840]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[PPCOAC]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0108915]]
+
−
*** [[B471_RS0108400]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
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−
* [[TRSARr]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0100390]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
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−
* [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
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* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
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−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
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−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CAT CAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CSp CSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DDPGA DDPGA]
+
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* [http://bigg.ucsd.edu/universal/reactions/DDPGAm DDPGAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCOAH FCOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCOAH2 FCOAH2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FDH FDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FDH2 FDH2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FDH3 FDH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FDH5r2pp FDH5r2pp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FDNG FDNG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FORA FORA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FORAMD FORAMD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FORAMDx FORAMDx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCALDDm GCALDDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLXO2p GLXO2p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLXO3r GLXO3r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDx GLYCLTDx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDy GLYCLTDy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCTO1p GLYCTO1p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HOXPRm HOXPRm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRDC HPYRDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRDCm HPYRDCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRI HPYRI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRRy HPYRRy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICL ICL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICL_1 ICL_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LALDO2x LALDO2x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCARS LCARS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NFORGLUAH NFORGLUAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXACOAL OXACOAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXADC OXADC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXADCm OXADCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXCDC OXCDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLYCPh PGLYCPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLYCPx PGLYCPx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TARTD TARTD]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Glyoxylate and dicarboxylate metabolism}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reaction found=23}}
+
{{#set: in pathway=}}
−
{{#set: total reaction=129}}
+
{{#set: reconstruction category=manual}}
−
{{#set: completion rate=18.0}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction from orthology templates not found by pantograph}}

Latest revision as of 16:37, 21 March 2018

Reaction EX_galur

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Galacturonate[e] =>

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=EX_galur&oldid=7471"