Difference between revisions of "Map00040"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] == * direction: ** REVERSIBLE * common name: ** Transketolase * Synonym(s): == Reaction...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] == * common_name: ** Pentose and glucuronate interconversions * Synonym(s): == Rea...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/TKT2 TKT2] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] ==
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* direction:
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* common_name:
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** REVERSIBLE
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** Pentose and glucuronate interconversions
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* common name:
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** Transketolase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''54''' reactions in the full pathway
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** 1.0 [[e4p]][c] '''+''' 1.0 [[xu5p__D]][c] '''<=>''' 1.0 [[g3p]][c] '''+''' 1.0 [[f6p]][c]
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* [[GALUi]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 D-Xylulose 5-phosphate[c] '''<=>''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 D-Fructose 6-phosphate[c]
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*** [[B471_RS0107615]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* [[B471_RS0108290]]
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*** [[orthology-aferrooxidans]]
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** [[pantograph]]-[[bsubtilis]]
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* [[RBP4E]]
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** [[pantograph]]-[[aferrooxidans]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[B471_RS0112070]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 2 reconstruction source(s) associated:
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-cljungdahlii]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[orthology-bsubtilis]]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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* [[RPE]]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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** 1 associated gene(s):
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** '''101''' reactions found over '''715''' reactions in the full pathway
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*** [[B471_RS23765]]
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* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
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** 3 reconstruction source(s) associated:
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** '''51''' reactions found over '''220''' reactions in the full pathway
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*** [[orthology-cljungdahlii]]
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* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
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*** [[orthology-bsubtilis]]
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** '''18''' reactions found over '''71''' reactions in the full pathway
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*** [[orthology-aferrooxidans]]
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* [[map01051]]: [http://www.genome.jp/dbget-bin/www_bget?map01051 map01051]
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* [[SBTD_D2]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** 2 associated gene(s):
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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*** [[B471_RS0106740]]
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** '''148''' reactions found over '''694''' reactions in the full pathway
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*** [[B471_RS0115645]]
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* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
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** 1 reconstruction source(s) associated:
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** '''20''' reactions found over '''69''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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== Reconstruction information  ==
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* [[UDPGD]]
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* Category: [[orthology]]
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** 2 associated gene(s):
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** Source: [[orthology-bsubtilis]]
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*** [[B471_RS0114430]]
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*** Tool: [[pantograph]]
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*** [[B471_RS0114260]]
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** Source: [[orthology-aferrooxidans]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[XYLK]]
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** 2 associated gene(s):
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*** [[B471_RS0113565]]
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*** [[B471_RS0101525]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3KGK 3KGK]
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* [http://bigg.ucsd.edu/universal/reactions/ABTD ABTD]
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* [http://bigg.ucsd.edu/universal/reactions/ABTDG ABTDG]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD22_L ALCD22_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALTRH ALTRH]
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* [http://bigg.ucsd.edu/universal/reactions/ARABR ARABR]
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* [http://bigg.ucsd.edu/universal/reactions/ARAI ARAI]
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* [http://bigg.ucsd.edu/universal/reactions/BILIRBU BILIRBU]
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* [http://bigg.ucsd.edu/universal/reactions/DGC3D DGC3D]
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* [http://bigg.ucsd.edu/universal/reactions/DGULND DGULND]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND1 DOGULND1]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND2 DOGULND2]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULNR DOGULNR]
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* [http://bigg.ucsd.edu/universal/reactions/FBA4 FBA4]
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* [http://bigg.ucsd.edu/universal/reactions/GALOR GALOR]
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* [http://bigg.ucsd.edu/universal/reactions/GALT GALT]
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* [http://bigg.ucsd.edu/universal/reactions/GUI1 GUI1]
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* [http://bigg.ucsd.edu/universal/reactions/GULN3D GULN3D]
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* [http://bigg.ucsd.edu/universal/reactions/GULND GULND]
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* [http://bigg.ucsd.edu/universal/reactions/GULNDer GULNDer]
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* [http://bigg.ucsd.edu/universal/reactions/GULNLR GULNLR]
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* [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC]
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* [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI]
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* [http://bigg.ucsd.edu/universal/reactions/MANAO MANAO]
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* [http://bigg.ucsd.edu/universal/reactions/MNNH MNNH]
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* [http://bigg.ucsd.edu/universal/reactions/RBK_L1 RBK_L1]
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* [http://bigg.ucsd.edu/universal/reactions/RBTDG RBTDG]
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* [http://bigg.ucsd.edu/universal/reactions/RMK RMK]
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* [http://bigg.ucsd.edu/universal/reactions/RMPA RMPA]
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* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
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* [http://bigg.ucsd.edu/universal/reactions/SBTD_L SBTD_L]
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* [http://bigg.ucsd.edu/universal/reactions/SBTRh SBTRh]
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* [http://bigg.ucsd.edu/universal/reactions/TAGURr TAGURr]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A10r UGT1A10r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A1r UGT1A1r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A3r UGT1A3r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A4r UGT1A4r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A5r UGT1A5r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A6r UGT1A6r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A7r UGT1A7r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A8r UGT1A8r]
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* [http://bigg.ucsd.edu/universal/reactions/X5PL3E X5PL3E]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI1 XYLI1]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI2 XYLI2]
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* [http://bigg.ucsd.edu/universal/reactions/XYLK2 XYLK2]
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* [http://bigg.ucsd.edu/universal/reactions/XYLR XYLR]
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* [http://bigg.ucsd.edu/universal/reactions/XYLTD_D XYLTD_D]
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* [http://bigg.ucsd.edu/universal/reactions/XYLUR XYLUR]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Pentose and glucuronate interconversions}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
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{{#set: reaction found=6}}
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* EC Number : 2.2.1.1
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{{#set: total reaction=54}}
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* MetaNetX (MNX) Equation : MNXR104869
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{{#set: completion rate=11.0}}
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* KEGG Reaction : R01830
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* BioCyc : META:2TRANSKETO-RXN
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Transketolase}}
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{{#set: gene associated=B471_RS0108290}}
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{{#set: in pathway=map01100|map01110|map01120|map01200|map00710|map01051|map01130|map00030}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
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−
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:15, 21 March 2018

Pathway map00040

  • common_name:
    • Pentose and glucuronate interconversions
  • Synonym(s):

Reaction(s) found

6 reactions found over 54 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00040&oldid=6456"