Difference between revisions of "Map00220"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EAR80y_CUT EAR80y_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With i...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220] == * common_name: ** Arginine biosynthesis * Synonym(s): == Reaction(s) found ==...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/EAR80y_CUT EAR80y_CUT] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220] ==
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* direction:
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* common_name:
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** REVERSIBLE
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** Arginine biosynthesis
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''13''' reactions found over '''65''' reactions in the full pathway
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** 1.0 [[toct2eACP]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''<=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[ocACP]][c]
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* [[ACGK]]
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* With common name(s):
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** 2 associated gene(s):
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** 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 Octanoyl-ACP (n-C8:0ACP)[c]
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*** [[B471_RS23385]]
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*** [[B471_RS21960]]
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== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-cljungdahlii]]
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* [[B471_RS0108775]]
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*** [[orthology-bsubtilis]]
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** missing_rxn_creator
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*** [[orthology-aferrooxidans]]
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== Pathways  ==
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* [[ACGS]]
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== Reconstruction information  ==
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** 3 associated gene(s):
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* Category: [[manual]]
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*** [[B471_RS0117540]]
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** Source: [[manual-missing_rxn_creator]]
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*** [[B471_RS21960]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
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*** [[B471_RS23385]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ACOTA]]
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** 1 associated gene(s):
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*** [[B471_RS0117530]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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* [[AGPR]]
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** 1 associated gene(s):
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*** [[B471_RS0117545]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ARGN]]
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** 1 associated gene(s):
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*** [[B471_RS0119575]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[ARGSL]]
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** 1 associated gene(s):
 +
*** [[B471_RS23380]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ARGSS]]
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** 1 associated gene(s):
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*** [[B471_RS0117525]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ASPTA]]
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** 1 associated gene(s):
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*** [[B471_RS0109180]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GLNS]]
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** 4 associated gene(s):
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*** [[B471_RS0118305]]
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*** [[B471_RS0113160]]
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*** [[B471_RS0117560]]
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*** [[B471_RS0113155]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GLUDy]]
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** 1 associated gene(s):
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*** [[B471_RS0108910]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[OCBT]]
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** 1 associated gene(s):
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*** [[B471_RS0119565]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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* [[ORNTAC]]
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** 3 associated gene(s):
 +
*** [[B471_RS23385]]
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*** [[B471_RS0117540]]
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*** [[B471_RS21960]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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* [[UREA]]
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** 3 associated gene(s):
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*** [[B471_RS0116215]]
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*** [[B471_RS0116220]]
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*** [[B471_RS0116225]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/ACGKm ACGKm]
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* [http://bigg.ucsd.edu/universal/reactions/ACGSm ACGSm]
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* [http://bigg.ucsd.edu/universal/reactions/ACODA ACODA]
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* [http://bigg.ucsd.edu/universal/reactions/ACOTAim ACOTAim]
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* [http://bigg.ucsd.edu/universal/reactions/AGPRim AGPRim]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_L ALATA_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
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* [http://bigg.ucsd.edu/universal/reactions/ALPHNH ALPHNH]
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* [http://bigg.ucsd.edu/universal/reactions/ALPHm ALPHm]
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* [http://bigg.ucsd.edu/universal/reactions/ARGDI ARGDI]
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* [http://bigg.ucsd.edu/universal/reactions/ARGDr ARGDr]
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* [http://bigg.ucsd.edu/universal/reactions/ARGNm ARGNm]
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* [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1]
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* [http://bigg.ucsd.edu/universal/reactions/ASNN ASNN]
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* [http://bigg.ucsd.edu/universal/reactions/ASNNe ASNNe]
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* [http://bigg.ucsd.edu/universal/reactions/ASNNm ASNNm]
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* [http://bigg.ucsd.edu/universal/reactions/ASNNpp ASNNpp]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPSE ASPSE]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/CBMKr CBMKr]
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* [http://bigg.ucsd.edu/universal/reactions/CPS CPS]
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* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
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* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
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* [http://bigg.ucsd.edu/universal/reactions/GDH GDH]
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* [http://bigg.ucsd.edu/universal/reactions/GDH1 GDH1]
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* [http://bigg.ucsd.edu/universal/reactions/GDH_nadp GDH_nadp]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
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* [http://bigg.ucsd.edu/universal/reactions/GLUDxi GLUDxi]
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* [http://bigg.ucsd.edu/universal/reactions/GLUDym GLUDym]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/NOS NOS]
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* [http://bigg.ucsd.edu/universal/reactions/NOS1 NOS1]
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* [http://bigg.ucsd.edu/universal/reactions/NOS2 NOS2]
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* [http://bigg.ucsd.edu/universal/reactions/NOS2_1 NOS2_1]
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* [http://bigg.ucsd.edu/universal/reactions/OCBTm OCBTm]
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* [http://bigg.ucsd.edu/universal/reactions/OCT OCT]
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* [http://bigg.ucsd.edu/universal/reactions/OCTh OCTh]
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* [http://bigg.ucsd.edu/universal/reactions/OCTm OCTm]
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* [http://bigg.ucsd.edu/universal/reactions/ORNTACim ORNTACim]
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* [http://bigg.ucsd.edu/universal/reactions/URCB URCB]
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* [http://bigg.ucsd.edu/universal/reactions/URCBm URCBm]
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* [http://bigg.ucsd.edu/universal/reactions/UREASE UREASE]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: common_name=Arginine biosynthesis}}
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{{#set: gene associated=B471_RS0108775}}
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{{#set: reaction found=13}}
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{{#set: in pathway=}}
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{{#set: total reaction=65}}
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{{#set: reconstruction category=manual}}
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{{#set: completion rate=20.0}}
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{{#set: reconstruction source=manual-missing_rxn_creator}}
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
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Latest revision as of 16:15, 21 March 2018

Pathway map00220

  • common_name:
    • Arginine biosynthesis
  • Synonym(s):

Reaction(s) found

13 reactions found over 65 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00220&oldid=6448"