Difference between revisions of "Map00260"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GALURt2r GALURt2r] == * direction: ** REVERSIBLE * common name: ** D-galacturonate transport via pr...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] == * common_name: ** Glycine, serine and threonine metabolism * Synonym(s): == Rea...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GALURt2r GALURt2r] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Glycine, serine and threonine metabolism
−
* common name:
+
−
** D-galacturonate transport via proton symport, reversible
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''24''' reactions found over '''133''' reactions in the full pathway
−
** 1.0 [[galur]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[galur]][c]
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* [[4HTHRS]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 D-Galacturonate[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 H+[c] '''+''' 1.0 D-Galacturonate[c]
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*** [[B471_RS0109995]]
−
 
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
−
Genes have been associated with this reaction based on different elements listed below.
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* [[ASAD]]
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* [[B471_RS0115825]]
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** 1 associated gene(s):
−
** [[pantograph]]-[[bsubtilis]]
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*** [[B471_RS0100620]]
−
== Pathways  ==
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** 3 reconstruction source(s) associated:
−
== Reconstruction information  ==
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*** [[orthology-cljungdahlii]]
−
* Category: [[orthology]]
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*** [[orthology-bsubtilis]]
−
** Source: [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
−
*** Tool: [[pantograph]]
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* [[ASPK]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0100615]]
 +
*** [[B471_RS0107565]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[CYSTS]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108360]]
 +
*** [[B471_RS0104440]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DALAOX]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0117705]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[GHMT2r]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101930]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[GLYAT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS22400]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[GLYCK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS21900]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[GLYCL]]
 +
** 6 associated gene(s):
 +
*** [[B471_RS0101935]]
 +
*** [[B471_RS0101930]]
 +
*** [[B471_RS0101950]]
 +
*** [[B471_RS0101940]]
 +
*** [[B471_RS0101945]]
 +
*** [[B471_RS0110920]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[HSDy]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS23515]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[HSK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109990]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[PGCD]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0105500]]
 +
*** [[B471_RS0108770]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[PGM]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0119315]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PSERT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105495]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PSP_L]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA160]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA161]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA180]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA181]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[SARCOX]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0117705]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[THRD]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0106740]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[THRD_L]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0107435]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[THRS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109995]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[TRPS1]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0109425]]
 +
*** [[B471_RS0109430]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTi AGTi]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDs AOBUTDs]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDsm AOBUTDsm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDxs AOBUTDxs]
 +
* [http://bigg.ucsd.edu/universal/reactions/APPLDHr APPLDHr]
 +
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ATHRDHr ATHRDHr]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHx BETALDHx]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHxm BETALDHxm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BETALDHy BETALDHy]
 +
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD2m CHOLD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
 +
* [http://bigg.ucsd.edu/universal/reactions/DABAAT DABAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
 +
* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/FOMETRi FOMETRi]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PL G3PL]
 +
* [http://bigg.ucsd.edu/universal/reactions/GACMTRc GACMTRc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2 GCC2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2am GCC2am]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2bim GCC2bim]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCa GCCa]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCam GCCam]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCb GCCb]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCbim GCCbim]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYAMDTRc GLYAMDTRc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCL_2 GLYCL_2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLm GLYCLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYDHD GLYDHD]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GNMT GNMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRRy HPYRRy]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSK_1 HSK_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTAM MTAM]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTAM_nh4 MTAM_nh4]
 +
* [http://bigg.ucsd.edu/universal/reactions/OHPBAT OHPBAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLYDH PGLYDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSAT PSAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP PSP]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP_D PSP_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSP_Lpp PSP_Lpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/R01465m R01465m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SARCOXp SARCOXp]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERH SERH]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPTc SPTc]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPTix SPTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THFAT THFAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/THFATm THFATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRA THRA]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRA_1 THRA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRS_1 THRS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS2 TRPS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS2h TRPS2h]
 +
* [http://bigg.ucsd.edu/universal/reactions/TRPS3 TRPS3]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR100020
+
{{#set: common_name=Glycine, serine and threonine metabolism}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reaction found=24}}
−
{{#set: common name=D-galacturonate transport via proton symport, reversible}}
+
{{#set: total reaction=133}}
−
{{#set: gene associated=B471_RS0115825}}
+
{{#set: completion rate=18.0}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-bsubtilis}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:16, 21 March 2018

Pathway map00260

  • common_name:
    • Glycine, serine and threonine metabolism
  • Synonym(s):

Reaction(s) found

24 reactions found over 133 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00260&oldid=6499"