Difference between revisions of "Map00270"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP2Aex MCTP2Aex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein crosslinking transpept...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] == * common_name: ** Cysteine and methionine metabolism * Synonym(s): == Reaction(...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP2Aex MCTP2Aex] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Cysteine and methionine metabolism
−
* common name:
+
−
** Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''24''' reactions found over '''135''' reactions in the full pathway
−
** 1.0 [[murein5p5p5p]][e] '''=>''' 1.0 [[murein5px4px4p]][e] '''+''' 2.0 [[ala__D]][e]
+
* [[ADMDC]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 Three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] '''=>''' 1.0 Three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)[e] '''+''' 2.0 D-Alanine[e]
+
*** [[B471_RS0100905]]
−
 
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** 3 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-cljungdahlii]]
−
Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
−
* [[B471_RS0109660]]
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*** [[orthology-aferrooxidans]]
−
** [[pantograph]]-[[cljungdahlii]]
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* [[AHCYSNS]]
−
* [[B471_RS0113655]]
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** 1 associated gene(s):
−
** [[pantograph]]-[[cljungdahlii]]
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*** [[B471_RS24265]]
−
* [[B471_RS0107545]]
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** 1 reconstruction source(s) associated:
−
** [[pantograph]]-[[cljungdahlii]]
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*** [[orthology-cljungdahlii]]
−
== Pathways  ==
+
* [[AHCi]]
−
== Reconstruction information  ==
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** 1 associated gene(s):
−
* Category: [[orthology]]
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*** [[B471_RS0100885]]
−
** Source: [[orthology-cljungdahlii]]
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** 1 reconstruction source(s) associated:
−
*** Tool: [[pantograph]]
+
*** [[orthology-aferrooxidans]]
 +
* [[AHSERL2]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS20990]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ASAD]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0100620]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ASP4DC]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[ASPK]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0100615]]
 +
*** [[B471_RS0107565]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ASPO1]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS23075]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ASPTA]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109180]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[CYSDS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0115950]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[CYSS]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0106095]]
 +
*** [[B471_RS0104440]]
 +
*** [[B471_RS0108360]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[CYSTS]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108360]]
 +
*** [[B471_RS0104440]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[HSDy]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS23515]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[HSERTA]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108305]]
 +
*** [[B471_RS20990]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ILETA]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0110105]]
 +
*** [[B471_RS0102340]]
 +
*** [[B471_RS0106435]]
 +
*** [[B471_RS0109150]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MDH]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108660]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[METAT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0117020]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[METS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109820]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MTAN]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS24265]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[MTRI]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0112260]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[SERAT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0118445]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[SHSL2r]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS20990]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[SPMS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0113665]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[SPRMS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0113665]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/2HBO 2HBO]
 +
* [http://bigg.ucsd.edu/universal/reactions/2OH3K5MPPISO 2OH3K5MPPISO]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSP 3SPYRSP]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPh 3SPYRSPh]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm 3SPYRSPm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm_1 3SPYRSPm_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
 +
* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCAHh ACCAHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCAHm ACCAHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSL ACHMSSELCYSL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSLh ACHMSSELCYSLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACPCS ACPCS]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERL ACSERL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERLh ACSERLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERLm ACSERLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULL ACSERSULL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLh ACSERSULLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLm ACSERSULLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADSHm ADSHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTi AGTi]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/AHAL AHAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/AHHST AHHST]
 +
* [http://bigg.ucsd.edu/universal/reactions/AHSERL AHSERL]
 +
* [http://bigg.ucsd.edu/universal/reactions/AHSL AHSL]
 +
* [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/APCS APCS]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARAT ARAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARD1 ARD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARD_1 ARD_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTINBL CTINBL]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSAT CYSAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSATm CYSATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSDDS CYSDDS]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSDO CYSDO]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSLYSL CYSLYSL]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSO CYSO]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSSADS CYSSADS]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSS_1 CYSS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSS_trdrd CYSS_trdrd]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSTA CYSTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSTAm CYSTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSTBL CYSTBL]
 +
* [http://bigg.ucsd.edu/universal/reactions/DMT DMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn DNAMTn]
 +
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn2r DNAMTn2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCL GCL]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUCYS GLUCYS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT HCYSMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT2 HCYSMT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
 +
* [http://bigg.ucsd.edu/universal/reactions/HSST HSST]
 +
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_L LDH_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MATm MATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCPST MCPST]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
 +
* [http://bigg.ucsd.edu/universal/reactions/METB1 METB1]
 +
* [http://bigg.ucsd.edu/universal/reactions/METGL METGL]
 +
* [http://bigg.ucsd.edu/universal/reactions/METSOXR1 METSOXR1]
 +
* [http://bigg.ucsd.edu/universal/reactions/METS_1 METS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/METSm METSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MHPGLUT MHPGLUT]
 +
* [http://bigg.ucsd.edu/universal/reactions/MS MS]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTAP MTAP]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTRK MTRK]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHCCE RHCCE]
 +
* [http://bigg.ucsd.edu/universal/reactions/SAT SAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SATm SATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD SEAHCYSHYD]
 +
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD_1 SEAHCYSHYD_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTL SELCYSTL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTLh SELCYSTLh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
 +
* [http://bigg.ucsd.edu/universal/reactions/SELMETAT SELMETAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SHSL1 SHSL1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SHSL1h SHSL1h]
 +
* [http://bigg.ucsd.edu/universal/reactions/SHSL2h SHSL2h]
 +
* [http://bigg.ucsd.edu/universal/reactions/SLCYSS SLCYSS]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSL SUCHMSSELCYSL]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSLh SUCHMSSELCYSLh]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101428
+
{{#set: common_name=Cysteine and methionine metabolism}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction found=24}}
−
{{#set: common name=Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)}}
+
{{#set: total reaction=135}}
−
{{#set: gene associated=B471_RS0109660|B471_RS0113655|B471_RS0107545}}
+
{{#set: completion rate=18.0}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:15, 21 March 2018

Pathway map00270

  • common_name:
    • Cysteine and methionine metabolism
  • Synonym(s):

Reaction(s) found

24 reactions found over 135 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00270&oldid=6428"