Difference between revisions of "Map00280"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == * direction: ** REVERSIBLE * common name: ** Malate dehydrogenase * Synonym(s): == Rea...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280] == * common_name: ** Valine, leucine and isoleucine degradation * Synonym(s): == R...")
 
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Valine, leucine and isoleucine degradation
−
* common name:
+
−
** Malate dehydrogenase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''16''' reactions found over '''155''' reactions in the full pathway
−
** 1.0 [[nad]][c] '''+''' 1.0 [[mal__L]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[oaa]][c] '''+''' 1.0 [[nadh]][c]
+
* [[ABUTD]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 L-Malate[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 Oxaloacetate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
+
*** [[B471_RS0119455]]
−
 
+
*** [[B471_RS0115620]]
−
== Genes associated with this reaction  ==
+
** 1 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-bsubtilis]]
−
* [[B471_RS0108660]]
+
* [[ACACT1r]]
−
** [[pantograph]]-[[bsubtilis]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[aferrooxidans]]
+
*** [[B471_RS0105350]]
−
== Pathways  ==
+
** 1 reconstruction source(s) associated:
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
*** [[orthology-bsubtilis]]
−
** '''471''' reactions found over '''2349''' reactions in the full pathway
+
* [[ACACT2r]]
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
** 2 associated gene(s):
−
** '''23''' reactions found over '''129''' reactions in the full pathway
+
*** [[B471_RS0110565]]
−
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
+
*** [[B471_RS0115615]]
−
** '''25''' reactions found over '''157''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
*** [[orthology-bsubtilis]]
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
* [[ACACT3r]]
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
** 2 associated gene(s):
−
** '''24''' reactions found over '''135''' reactions in the full pathway
+
*** [[B471_RS0110565]]
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
*** [[B471_RS0115615]]
−
** '''51''' reactions found over '''220''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
+
*** [[orthology-bsubtilis]]
−
** '''18''' reactions found over '''71''' reactions in the full pathway
+
* [[ACACT4r]]
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
+
** 2 associated gene(s):
−
** '''14''' reactions found over '''75''' reactions in the full pathway
+
*** [[B471_RS0110565]]
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
*** [[B471_RS0115615]]
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
+
*** [[orthology-bsubtilis]]
−
** '''22''' reactions found over '''163''' reactions in the full pathway
+
* [[ACACT7r]]
−
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
+
** 2 associated gene(s):
−
** '''10''' reactions found over '''70''' reactions in the full pathway
+
*** [[B471_RS0115615]]
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
*** [[B471_RS0110565]]
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
== Reconstruction information  ==
+
*** [[orthology-bsubtilis]]
−
* Category: [[orthology]]
+
* [[ASPO1]]
−
** Source: [[orthology-bsubtilis]]
+
** 1 associated gene(s):
−
*** Tool: [[pantograph]]
+
*** [[B471_RS23075]]
−
** Source: [[orthology-aferrooxidans]]
+
** 1 reconstruction source(s) associated:
−
*** Tool: [[pantograph]]
+
*** [[orthology-bsubtilis]]
 +
* [[ECOAH9ir]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115580]]
 +
*** [[B471_RS0110785]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[HACD1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[HMGL]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108405]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ILETA]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0110105]]
 +
*** [[B471_RS0102340]]
 +
*** [[B471_RS0106435]]
 +
*** [[B471_RS0109150]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[LEUTA]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0106435]]
 +
*** [[B471_RS0110105]]
 +
*** [[B471_RS0102340]]
 +
*** [[B471_RS0109150]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[OCOAT1]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115600]]
 +
*** [[B471_RS0115595]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[PPCOAC]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0108400]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[VALTA]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0109150]]
 +
*** [[B471_RS0110105]]
 +
*** [[B471_RS0106435]]
 +
*** [[B471_RS0102340]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHL 3HBCOAHL]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCOAHLm 3HBCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/4M2OPLOXRD 4M2OPLOXRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTO2OX 5HOXINDACTO2OX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACOAT AACOAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD8m ACOAD8m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/APATr APATr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTA_glu_h BCTA_glu_h]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
 +
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/CITALALDOR CITALALDOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/D3AIBTm D3AIBTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHRT_2mbcoa DHRT_2mbcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHRT_ivcoa DHRT_ivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDm HIBDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBH HIBH]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGCOAS HMGCOAS]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LEUTAi LEUTAi]
 +
* [http://bigg.ucsd.edu/universal/reactions/LEUTAm LEUTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MBCOAi MBCOAi]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCCC MCCC]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCCCrm MCCCrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MCTC MCTC]
 +
* [http://bigg.ucsd.edu/universal/reactions/MGCH MGCH]
 +
* [http://bigg.ucsd.edu/universal/reactions/MGCHrm MGCHrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
 +
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1 MMSAD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD1m MMSAD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3 MMSAD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSAD3m MMSAD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMSDH MMSDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMTSAO MMTSAO]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD MOD]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mhtpp MOD_3mhtpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_3mop MOD_3mop]
 +
* [http://bigg.ucsd.edu/universal/reactions/MOD_4mop MOD_4mop]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1m OCOAT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
 
== External links  ==
 
== External links  ==
−
* EC Number : 1.1.1.299
+
{{#set: common_name=Valine, leucine and isoleucine degradation}}
−
* BioCyc : META:MALATE-DEH-RXN
+
{{#set: reaction found=16}}
−
* MetaNetX (MNX) Equation : MNXR101439
+
{{#set: total reaction=155}}
−
* RHEA:
+
{{#set: completion rate=10.0}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
+
−
* Reactome : REACT_R-ATH-70979
+
−
* KEGG Reaction : R00342
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Malate dehydrogenase}}
+
−
{{#set: gene associated=B471_RS0108660}}
+
−
{{#set: in pathway=map01100|map00630|map00720|map01120|map00270|map01200|map00710|map00680|map01110|map00620|map00020|map01130}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:16, 21 March 2018

Pathway map00280

  • common_name:
    • Valine, leucine and isoleucine degradation
  • Synonym(s):

Reaction(s) found

16 reactions found over 155 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00280&oldid=6489"