Difference between revisions of "Map00520"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PYNP1 PYNP1] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyrimidine-nucleoside phosphorylase...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520] == * common_name: ** Amino sugar and nucleotide sugar metabolism * Synonym(s): ==...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PYNP1 PYNP1] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00520 map00520] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Amino sugar and nucleotide sugar metabolism
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* common name:
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** Pyrimidine-nucleoside phosphorylase (cytosine)
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''19''' reactions found over '''80''' reactions in the full pathway
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** 1.0 [[csn]][c] '''+''' 1.0 [[r1p]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[cytd]][c]
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* [[ACM6PH]]
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* With common name(s):
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** 0 associated gene:
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** 1.0 Cytosine[c] '''+''' 1.0 Alpha-D-Ribose 1-phosphate[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Cytidine[c]
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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== Genes associated with this reaction  ==
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* [[AGDC]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* [[B471_RS0113285]]
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*** [[B471_RS24325]]
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** [[pantograph]]-[[cljungdahlii]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[bsubtilis]]
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*** [[orthology-bsubtilis]]
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== Pathways  ==
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* [[G1PACT]]
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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** 1 associated gene(s):
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** '''68''' reactions found over '''244''' reactions in the full pathway
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*** [[B471_RS0107445]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 3 reconstruction source(s) associated:
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-cljungdahlii]]
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== Reconstruction information  ==
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*** [[orthology-bsubtilis]]
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* Category: [[orthology]]
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*** [[orthology-aferrooxidans]]
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** Source: [[orthology-cljungdahlii]]
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* [[G6PDA]]
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*** Tool: [[pantograph]]
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** 1 associated gene(s):
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** Source: [[orthology-bsubtilis]]
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*** [[B471_RS22800]]
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[GALUi]]
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** 1 associated gene(s):
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*** [[B471_RS0107615]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GF6PTA]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105605]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
 +
* [[HEX1]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108295]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[MAN1PT2]]
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** 1 associated gene(s):
 +
*** [[B471_RS0107610]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[MAN6PI]]
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** 1 associated gene(s):
 +
*** [[B471_RS0107610]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
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* [[PGAMT]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105610]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[PGI]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108285]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
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* [[PGMT]]
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** 2 associated gene(s):
 +
*** [[B471_RS0105610]]
 +
*** [[B471_RS0119315]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
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* [[UAG2E]]
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** 2 associated gene(s):
 +
*** [[B471_RS0112885]]
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*** [[B471_RS0114280]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[UAG2EMA]]
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** 2 associated gene(s):
 +
*** [[B471_RS0112885]]
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*** [[B471_RS0114280]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[UAGCVT]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105355]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[UAGDP]]
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** 1 associated gene(s):
 +
*** [[B471_RS0107445]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[UAPGR]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108995]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[UDPG4E]]
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** 1 associated gene(s):
 +
*** [[B471_RS21920]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[UDPGD]]
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** 2 associated gene(s):
 +
*** [[B471_RS0114430]]
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*** [[B471_RS0114260]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/AAPT AAPT]
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* [http://bigg.ucsd.edu/universal/reactions/ABFPT ABFPT]
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* [http://bigg.ucsd.edu/universal/reactions/ABFPTh ABFPTh]
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* [http://bigg.ucsd.edu/universal/reactions/ACGAM2E ACGAM2E]
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* [http://bigg.ucsd.edu/universal/reactions/ACGAM6PS ACGAM6PS]
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* [http://bigg.ucsd.edu/universal/reactions/ACGAMK ACGAMK]
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* [http://bigg.ucsd.edu/universal/reactions/ACGAMPM ACGAMPM]
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* [http://bigg.ucsd.edu/universal/reactions/ACNAM9PL ACNAM9PL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACNAMPH ACNAMPH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACNMCT ACNMCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACNML ACNML]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACNPLYS ACNPLYS]
 +
* [http://bigg.ucsd.edu/universal/reactions/AHEXASE3 AHEXASE3]
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* [http://bigg.ucsd.edu/universal/reactions/AM6PTh AM6PTh]
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* [http://bigg.ucsd.edu/universal/reactions/AMANAPEr AMANAPEr]
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* [http://bigg.ucsd.edu/universal/reactions/AMANK AMANK]
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* [http://bigg.ucsd.edu/universal/reactions/CDPGLC46DH CDPGLC46DH]
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* [http://bigg.ucsd.edu/universal/reactions/CMPSASn CMPSASn]
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* [http://bigg.ucsd.edu/universal/reactions/F1PGT F1PGT]
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* [http://bigg.ucsd.edu/universal/reactions/FK FK]
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* [http://bigg.ucsd.edu/universal/reactions/G1PCTYT G1PCTYT]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI G6PI]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI2 G6PI2]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI3 G6PI3]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI_1 G6PI_1]
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* [http://bigg.ucsd.edu/universal/reactions/G6PIh G6PIh]
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* [http://bigg.ucsd.edu/universal/reactions/GALKh GALKh]
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* [http://bigg.ucsd.edu/universal/reactions/GALKr GALKr]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALT GALT]
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* [http://bigg.ucsd.edu/universal/reactions/GF6PTA_1 GF6PTA_1]
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* [http://bigg.ucsd.edu/universal/reactions/GFUCS GFUCS]
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* [http://bigg.ucsd.edu/universal/reactions/GLGC GLGC]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLPThi GLPThi]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUKA GLUKA]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUKAh GLUKAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/GMAND GMAND]
 +
* [http://bigg.ucsd.edu/universal/reactions/GOFUCR GOFUCR]
 +
* [http://bigg.ucsd.edu/universal/reactions/HEX10 HEX10]
 +
* [http://bigg.ucsd.edu/universal/reactions/HEX4 HEX4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HEX7 HEX7]
 +
* [http://bigg.ucsd.edu/universal/reactions/MAN1PT MAN1PT]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPAKI MPAKI]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGCM PGCM]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIA PGIA]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIAh PGIAh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGIBh PGIBh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGMTh PGMTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PMANM PMANM]
 +
* [http://bigg.ucsd.edu/universal/reactions/SQD1 SQD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/UA4E UA4E]
 +
* [http://bigg.ucsd.edu/universal/reactions/UACMAMO UACMAMO]
 +
* [http://bigg.ucsd.edu/universal/reactions/UAG4Ei UAG4Ei]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPACGLP UDPACGLP]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGALM UDPGALM]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGALOR UDPGALOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGLDC UDPGLDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPGLDCg UDPGLDCg]
 +
* [http://bigg.ucsd.edu/universal/reactions/UDPSQS UDPSQS]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGE UGE]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGLT UGLT]
 +
* [http://bigg.ucsd.edu/universal/reactions/ULA4NFT ULA4NFT]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR103376
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{{#set: common_name=Amino sugar and nucleotide sugar metabolism}}
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* KEGG Reaction : R02296
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{{#set: reaction found=19}}
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* EC Number : 2.4.2.2
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{{#set: total reaction=80}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=24.0}}
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{{#set: common name=Pyrimidine-nucleoside phosphorylase (cytosine)}}
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−
{{#set: gene associated=B471_RS0113285}}
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−
{{#set: in pathway=map00240|map01100}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
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−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:15, 21 March 2018

Pathway map00520

  • common_name:
    • Amino sugar and nucleotide sugar metabolism
  • Synonym(s):

Reaction(s) found

19 reactions found over 80 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00520&oldid=6431"