Difference between revisions of "Map00564"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PERD PERD] == * direction: ** REVERSIBLE * common name: ** Erythronate 4-phosphate (4per) dehydroge...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564] == * common_name: ** Glycerophospholipid metabolism * Synonym(s): == Reaction(s) f...")
 
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PERD PERD] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Glycerophospholipid metabolism
−
* common name:
+
−
** Erythronate 4-phosphate (4per) dehydrogenase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''36''' reactions found over '''134''' reactions in the full pathway
−
** 1.0 [[4per]][c] '''+''' 1.0 [[nad]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[ohpb]][c]
+
* [[AGPAT120]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 4-Phospho-D-erythronate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 2-Oxo-3-hydroxy-4-phosphobutanoate[c]
+
*** [[B471_RS0101020]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-cljungdahlii]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[AGPAT140]]
−
* [[B471_RS0105500]]
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** 1 associated gene(s):
−
** [[pantograph]]-[[aferrooxidans]]
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*** [[B471_RS0101020]]
−
== Pathways  ==
+
** 1 reconstruction source(s) associated:
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[orthology-cljungdahlii]]
−
** '''471''' reactions found over '''2349''' reactions in the full pathway
+
* [[AGPAT160]]
−
* [[map00750]]: [http://www.genome.jp/dbget-bin/www_bget?map00750 map00750]
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** 1 associated gene(s):
−
** '''6''' reactions found over '''25''' reactions in the full pathway
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*** [[B471_RS0101020]]
−
== Reconstruction information  ==
+
** 1 reconstruction source(s) associated:
−
* Category: [[orthology]]
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*** [[orthology-cljungdahlii]]
−
** Source: [[orthology-aferrooxidans]]
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* [[AGPAT161]]
−
*** Tool: [[pantograph]]
+
** 1 associated gene(s):
 +
*** [[B471_RS0101020]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[AGPAT180]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101020]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[AGPAT181]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101020]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[DASYN120]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN140]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN141]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN160]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN161]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN180]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[DASYN181]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[G3PCT]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[G3PD2]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0100985]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[GPDDA1]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS24705]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[GPDDA2]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS24705]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[GPDDA4]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS24705]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[PGPP120]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PGPP160]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PGPP161]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PGPP180]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PGPP181]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PGSA120]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0110395]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PGSA160]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0110395]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PGSA161]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0110395]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PGSA180]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0110395]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PGSA181]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0110395]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[PSD160]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSD161]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSD180]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSD181]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA160]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA161]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA180]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[PSSA181]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/2AGPEAT160 2AGPEAT160]
 +
* [http://bigg.ucsd.edu/universal/reactions/2AGPEAT180 2AGPEAT180]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACHEe ACHEe]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPAT141 AGPAT141]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGPAT160h AGPAT160h]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA120 CDAPPA120]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA140 CDAPPA140]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA141 CDAPPA141]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA160 CDAPPA160]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA161 CDAPPA161]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA180 CDAPPA180]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA181 CDAPPA181]
 +
* [http://bigg.ucsd.edu/universal/reactions/CDAPPA_HP CDAPPA_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHAT CHAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHATn CHATn]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLP CHLP]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLPCTD CHLPCTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLK CHOLK]
 +
* [http://bigg.ucsd.edu/universal/reactions/CPCTDTX CPCTDTX]
 +
* [http://bigg.ucsd.edu/universal/reactions/DAGK160 DAGK160]
 +
* [http://bigg.ucsd.edu/universal/reactions/DAGK160h DAGK160h]
 +
* [http://bigg.ucsd.edu/universal/reactions/DASYN_HP DASYN_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/EPCTX EPCTX]
 +
* [http://bigg.ucsd.edu/universal/reactions/ETHAAL ETHAAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ETHAK ETHAK]
 +
* [http://bigg.ucsd.edu/universal/reactions/ETHP ETHP]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT120 G3PAT120]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT140 G3PAT140]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT141 G3PAT141]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT160 G3PAT160]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT160_1 G3PAT160_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT160h G3PAT160h]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT161 G3PAT161]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT180 G3PAT180]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT180h G3PAT180h]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT181 G3PAT181]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PAT181h G3PAT181h]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD G3PD]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD1 G3PD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD1ir G3PD1ir]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD1irm G3PD1irm]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD2_1 G3PD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PD2m G3PD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PDm G3PDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/G3PO G3PO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GPDDA1pp GPDDA1pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GPDDA2pp GPDDA2pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GPDDA3 GPDDA3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GPDDA3pp GPDDA3pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GPDDA4pp GPDDA4pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A120pp LPLIPAL1A120pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A140pp LPLIPAL1A140pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A141pp LPLIPAL1A141pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A160pp LPLIPAL1A160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A180pp LPLIPAL1A180pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A120 LPLIPAL2A120]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A140 LPLIPAL2A140]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A141 LPLIPAL2A141]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A160 LPLIPAL2A160]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A180 LPLIPAL2A180]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2E160 LPLIPAL2E160]
 +
* [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2E180 LPLIPAL2E180]
 +
* [http://bigg.ucsd.edu/universal/reactions/PAPA160 PAPA160]
 +
* [http://bigg.ucsd.edu/universal/reactions/PAPA160h PAPA160h]
 +
* [http://bigg.ucsd.edu/universal/reactions/PAPA160pp PAPA160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PEPT_EC PEPT_EC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PETHCT PETHCT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP120pp PGPP120pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP160pp PGPP160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP161pp PGPP161pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP180pp PGPP180pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP181pp PGPP181pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP_EC PGPP_EC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGPP_HP PGPP_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGSA_HP PGSA_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1A120pp PLIPA1A120pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1A140pp PLIPA1A140pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1A141pp PLIPA1A141pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1A160pp PLIPA1A160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1A180pp PLIPA1A180pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1E160 PLIPA1E160]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1E160pp PLIPA1E160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1E180 PLIPA1E180]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA1E180pp PLIPA1E180pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA2A120pp PLIPA2A120pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA2A140pp PLIPA2A140pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA2A141pp PLIPA2A141pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA2A160pp PLIPA2A160pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PLIPA2A180pp PLIPA2A180pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSD120 PSD120]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSD_EC PSD_EC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSD_HP PSD_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
 +
* [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBPP1 SBPP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBPP1er SBPP1er]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBPP3 SBPP3]
 +
* [http://bigg.ucsd.edu/universal/reactions/SBPP3er SBPP3er]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Glycerophospholipid metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18829 18829]
+
{{#set: reaction found=36}}
−
* EC Number : 1.1.1.290
+
{{#set: total reaction=134}}
−
* MetaNetX (MNX) Equation : MNXR102495
+
{{#set: completion rate=27.0}}
−
* KEGG Reaction : R04210
+
−
* BioCyc : META:ERYTHRON4PDEHYDROG-RXN
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Erythronate 4-phosphate (4per) dehydrogenase}}
+
−
{{#set: gene associated=B471_RS0105500}}
+
−
{{#set: in pathway=map01100|map00750}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-aferrooxidans}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:15, 21 March 2018

Pathway map00564

  • common_name:
    • Glycerophospholipid metabolism
  • Synonym(s):

Reaction(s) found

36 reactions found over 134 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00564&oldid=6464"