Difference between revisions of "Map00630"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] == * direction: ** REVERSIBLE * common name: ** Aconitase (half-reaction A, Citrate...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] == * common_name: ** Glyoxylate and dicarboxylate metabolism * Synonym(s): == Reac...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] ==
−
* direction:
+
* common_name:
−
** REVERSIBLE
+
** Glyoxylate and dicarboxylate metabolism
−
* common name:
+
−
** Aconitase (half-reaction A, Citrate hydro-lyase)
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''23''' reactions found over '''129''' reactions in the full pathway
−
** 1.0 [[cit]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[acon_C]][c]
+
* [[ACACT1r]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 Citrate[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 1.0 Cis-Aconitate[c]
+
*** [[B471_RS0105350]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-bsubtilis]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[ACACT2r]]
−
* [[B471_RS0105965]]
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** 2 associated gene(s):
−
** [[pantograph]]-[[cljungdahlii]]
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*** [[B471_RS0110565]]
−
** [[pantograph]]-[[aferrooxidans]]
+
*** [[B471_RS0115615]]
−
== Pathways  ==
+
** 1 reconstruction source(s) associated:
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
*** [[orthology-bsubtilis]]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
* [[ACACT3r]]
−
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
+
** 2 associated gene(s):
−
** '''23''' reactions found over '''129''' reactions in the full pathway
+
*** [[B471_RS0110565]]
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
*** [[B471_RS0115615]]
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
*** [[orthology-bsubtilis]]
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
* [[ACACT4r]]
−
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
+
** 2 associated gene(s):
−
** '''26''' reactions found over '''80''' reactions in the full pathway
+
*** [[B471_RS0110565]]
−
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
+
*** [[B471_RS0115615]]
−
** '''25''' reactions found over '''157''' reactions in the full pathway
+
** 1 reconstruction source(s) associated:
−
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
+
*** [[orthology-bsubtilis]]
−
** '''10''' reactions found over '''70''' reactions in the full pathway
+
* [[ACACT7r]]
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
** 2 associated gene(s):
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
*** [[B471_RS0115615]]
−
== Reconstruction information  ==
+
*** [[B471_RS0110565]]
−
* [[orthology]]:
+
** 1 reconstruction source(s) associated:
−
** [[pantograph]]:
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*** [[orthology-bsubtilis]]
−
*** [[aferrooxidans]]
+
* [[ACONT]]
−
*** [[cljungdahlii]]
+
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[ACONTa]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACONTb]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[CS]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109275]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ECOAH1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[FTHFD]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0103250]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[GCALDD]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115620]]
 +
*** [[B471_RS0119455]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[GHMT2r]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101930]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[GLNS]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0118305]]
 +
*** [[B471_RS0113160]]
 +
*** [[B471_RS0117560]]
 +
*** [[B471_RS0113155]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[GLXCL]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[GLYCK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS21900]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[GLYCTO1]]
 +
** 7 associated gene(s):
 +
*** [[B471_RS0100385]]
 +
*** [[B471_RS0103425]]
 +
*** [[B471_RS0100380]]
 +
*** [[B471_RS21575]]
 +
*** [[B471_RS0100405]]
 +
*** [[B471_RS21905]]
 +
*** [[B471_RS23835]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MALS]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[MDH]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108660]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[PGLYCP]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0117485]]
 +
*** [[B471_RS21140]]
 +
*** [[B471_RS0117840]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[PPCOAC]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0108400]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[TRSARr]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0100390]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
 +
* [http://bigg.ucsd.edu/universal/reactions/CAT CAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
 +
* [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
 +
* [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CSp CSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/DDPGA DDPGA]
 +
* [http://bigg.ucsd.edu/universal/reactions/DDPGAm DDPGAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/FCOAH FCOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/FCOAH2 FCOAH2]
 +
* [http://bigg.ucsd.edu/universal/reactions/FDH FDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/FDH2 FDH2]
 +
* [http://bigg.ucsd.edu/universal/reactions/FDH3 FDH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/FDH5r2pp FDH5r2pp]
 +
* [http://bigg.ucsd.edu/universal/reactions/FDNG FDNG]
 +
* [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
 +
* [http://bigg.ucsd.edu/universal/reactions/FORA FORA]
 +
* [http://bigg.ucsd.edu/universal/reactions/FORAMD FORAMD]
 +
* [http://bigg.ucsd.edu/universal/reactions/FORAMDx FORAMDx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GCALDDm GCALDDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLXO2p GLXO2p]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLXO3r GLXO3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDx GLYCLTDx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDy GLYCLTDy]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYCTO1p GLYCTO1p]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
 +
* [http://bigg.ucsd.edu/universal/reactions/HOXPRm HOXPRm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRDC HPYRDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRDCm HPYRDCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRI HPYRI]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HPYRRy HPYRRy]
 +
* [http://bigg.ucsd.edu/universal/reactions/ICL ICL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ICL_1 ICL_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/LALDO2x LALDO2x]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCARS LCARS]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/NFORGLUAH NFORGLUAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXACOAL OXACOAL]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXADC OXADC]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXADCm OXADCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OXCDC OXCDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLYCPh PGLYCPh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PGLYCPx PGLYCPx]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
 +
* [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
 +
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
 +
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
 +
* [http://bigg.ucsd.edu/universal/reactions/TARTD TARTD]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Glyoxylate and dicarboxylate metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
+
{{#set: reaction found=23}}
−
* BioCyc : META:ACONITATEDEHYDR-RXN
+
{{#set: total reaction=129}}
−
* MetaNetX (MNX) Equation : MNXR95386
+
{{#set: completion rate=18.0}}
−
* KEGG Reaction : R01325
+
−
* EC Number : 4.2.1.3
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=Aconitase (half-reaction A, Citrate hydro-lyase)}}
+
−
{{#set: gene associated=B471_RS0105965}}
+
−
{{#set: in pathway=map01100|map00630|map01110|map01120|map01210|map00720|map00020|map01130}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii}}
+

Latest revision as of 16:14, 21 March 2018

Pathway map00630

  • common_name:
    • Glyoxylate and dicarboxylate metabolism
  • Synonym(s):

Reaction(s) found

23 reactions found over 129 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00630&oldid=6404"