Difference between revisions of "Map00680"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ASP4DC ASP4DC] == * direction: ** LEFT-TO-RIGHT * common name: ** Aspartate 4-decarboxylase * Synon...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680] == * common_name: ** Methane metabolism * Synonym(s): == Reaction(s) found == '''...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ASP4DC ASP4DC] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Methane metabolism
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* common name:
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** Aspartate 4-decarboxylase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''14''' reactions found over '''75''' reactions in the full pathway
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** 1.0 [[asp__L]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[ala__L]][c] '''+''' 1.0 [[co2]][c]
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* [[ACS]]
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* With common name(s):
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** 3 associated gene(s):
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** 1.0 L-Aspartate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 L-Alanine[c] '''+''' 1.0 CO2 CO2[c]
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*** [[B471_RS0108000]]
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*** [[B471_RS0102585]]
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== Genes associated with this reaction  ==
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*** [[B471_RS0101560]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[orthology-bsubtilis]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-aferrooxidans]]
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* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
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* [[ALDD1]]
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** '''24''' reactions found over '''135''' reactions in the full pathway
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** 2 associated gene(s):
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* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
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*** [[B471_RS0115620]]
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** '''22''' reactions found over '''93''' reactions in the full pathway
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*** [[B471_RS0119455]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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** 1 reconstruction source(s) associated:
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** '''78''' reactions found over '''228''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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== Reconstruction information  ==
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* [[ENO]]
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* Category: [[manual]]
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** 1 associated gene(s):
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** Source: [[manual-reaction_to_add_delete]]
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*** [[B471_RS0119310]]
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*** Comment: [[reaction added from literature evidence or biological expertise]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[FBA]]
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** 2 associated gene(s):
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*** [[B471_RS0118210]]
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*** [[B471_RS0101615]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[FBA2]]
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** 1 associated gene(s):
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*** [[B471_RS0101615]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[FBA3]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[FBP]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[GHMT2r]]
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** 1 associated gene(s):
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*** [[B471_RS0101930]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[MDH]]
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** 1 associated gene(s):
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*** [[B471_RS0108660]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[PFK]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[PGCD]]
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** 2 associated gene(s):
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*** [[B471_RS0105500]]
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*** [[B471_RS0108770]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[PGM]]
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** 1 associated gene(s):
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*** [[B471_RS0119315]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[PSERT]]
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** 1 associated gene(s):
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*** [[B471_RS0105495]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[PSP_L]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/7MHTS 7MHTS]
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* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
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* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
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* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
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* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
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* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD1 ALCD1]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/CH2ACH CH2ACH]
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* [http://bigg.ucsd.edu/universal/reactions/CH3ACH CH3ACH]
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* [http://bigg.ucsd.edu/universal/reactions/COBS COBS]
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* [http://bigg.ucsd.edu/universal/reactions/DHAK DHAK]
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* [http://bigg.ucsd.edu/universal/reactions/DMAMT DMAMT]
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* [http://bigg.ucsd.edu/universal/reactions/ENOf ENOf]
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* [http://bigg.ucsd.edu/universal/reactions/ENOm ENOm]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FDH FDH]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/GF4GL_0 GF4GL_0]
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* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
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* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
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* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
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* [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
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* [http://bigg.ucsd.edu/universal/reactions/LPFPLT LPFPLT]
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* [http://bigg.ucsd.edu/universal/reactions/LPPGS LPPGS]
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* [http://bigg.ucsd.edu/universal/reactions/MCMMT MCMMT]
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* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
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* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
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* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
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* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
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* [http://bigg.ucsd.edu/universal/reactions/OHPBAT OHPBAT]
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* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
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* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_adp PFK_adp]
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* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
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* [http://bigg.ucsd.edu/universal/reactions/PGLYDH PGLYDH]
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* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
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* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
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* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
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* [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
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* [http://bigg.ucsd.edu/universal/reactions/PSAT PSAT]
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* [http://bigg.ucsd.edu/universal/reactions/PSP PSP]
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* [http://bigg.ucsd.edu/universal/reactions/PSP_D PSP_D]
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* [http://bigg.ucsd.edu/universal/reactions/PSP_Lpp PSP_Lpp]
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* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
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* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
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* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
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* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
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* [http://bigg.ucsd.edu/universal/reactions/RH2CD RH2CD]
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* [http://bigg.ucsd.edu/universal/reactions/RH3CD RH3CD]
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* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
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* [http://bigg.ucsd.edu/universal/reactions/SPDC SPDC]
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* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
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* [http://bigg.ucsd.edu/universal/reactions/TMAMT TMAMT]
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* [http://bigg.ucsd.edu/universal/reactions/TYRCBOX TYRCBOX]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Methane metabolism}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12621 12621]
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{{#set: reaction found=14}}
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* BioCyc : META:ASPARTATE-4-DECARBOXYLASE-RXN
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{{#set: total reaction=75}}
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* MetaNetX (MNX) Equation : MNXR96078
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{{#set: completion rate=19.0}}
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* KEGG Reaction : R00397
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* EC Number : 4.1.1.12
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Aspartate 4-decarboxylase}}
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{{#set: in pathway=map01100|map00270|map00250|map01230}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=manual-reaction_to_add_delete}}
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{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
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Latest revision as of 16:16, 21 March 2018

Pathway map00680

  • common_name:
    • Methane metabolism
  • Synonym(s):

Reaction(s) found

14 reactions found over 75 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00680&oldid=6486"