Difference between revisions of "Map00740"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRASCSi_CUT PRASCSi_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00740 map00740] == * common_name: ** Riboflavin metabolism * Synonym(s): == Reaction(s) found ==...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRASCSi_CUT PRASCSi_CUT] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00740 map00740] ==
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* direction:
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* common_name:
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** REVERSIBLE
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** Riboflavin metabolism
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''38''' reactions in the full pathway
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** 1.0 [[atp]][c] '''+''' 1.0 [[5aizc]][c] '''+''' 1.0 [[asp__L]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[25aics]][c]
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* [[APRAUR]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c] '''+''' 1.0 L-Aspartate[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate[c]
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*** [[B471_RS0107790]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aferrooxidans]]
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* [[B471_RS0105280]]
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* [[DB4PS]]
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** missing_rxn_creator
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** 2 associated gene(s):
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== Pathways  ==
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*** [[B471_RS0114545]]
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== Reconstruction information  ==
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*** [[B471_RS0107780]]
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* Category: [[manual]]
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** 2 reconstruction source(s) associated:
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** Source: [[manual-missing_rxn_creator]]
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*** [[orthology-bsubtilis]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
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*** [[orthology-aferrooxidans]]
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* [[FMNAT]]
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** 1 associated gene(s):
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*** [[B471_RS0100675]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[FMNRx2]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[PMDPHT]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[RBFK]]
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** 1 associated gene(s):
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*** [[B471_RS0100675]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[RBFSa]]
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** 2 associated gene(s):
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*** [[B471_RS0107775]]
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*** [[B471_RS0107785]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[RBFSb]]
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** 2 associated gene(s):
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*** [[B471_RS0107785]]
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*** [[B471_RS0107775]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/ACP1_FMN ACP1_FMN]
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* [http://bigg.ucsd.edu/universal/reactions/ACP1e ACP1e]
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* [http://bigg.ucsd.edu/universal/reactions/AFAT AFAT]
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* [http://bigg.ucsd.edu/universal/reactions/ALKP ALKP]
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* [http://bigg.ucsd.edu/universal/reactions/AUNOR AUNOR]
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* [http://bigg.ucsd.edu/universal/reactions/AUS AUS]
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* [http://bigg.ucsd.edu/universal/reactions/DHPPDA2 DHPPDA2]
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* [http://bigg.ucsd.edu/universal/reactions/DLDLBT DLDLBT]
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* [http://bigg.ucsd.edu/universal/reactions/DNADDP DNADDP]
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* [http://bigg.ucsd.edu/universal/reactions/DPCOAPP DPCOAPP]
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* [http://bigg.ucsd.edu/universal/reactions/FADDP FADDP]
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* [http://bigg.ucsd.edu/universal/reactions/FADRx FADRx]
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* [http://bigg.ucsd.edu/universal/reactions/FADRx2 FADRx2]
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* [http://bigg.ucsd.edu/universal/reactions/FLVR FLVR]
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* [http://bigg.ucsd.edu/universal/reactions/FLVRx FLVRx]
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* [http://bigg.ucsd.edu/universal/reactions/FMNATm FMNATm]
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* [http://bigg.ucsd.edu/universal/reactions/FMNRx FMNRx]
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* [http://bigg.ucsd.edu/universal/reactions/GTPCII2 GTPCII2]
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* [http://bigg.ucsd.edu/universal/reactions/NADDP NADDP]
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* [http://bigg.ucsd.edu/universal/reactions/NADDPe NADDPe]
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* [http://bigg.ucsd.edu/universal/reactions/NADDPp NADDPp]
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* [http://bigg.ucsd.edu/universal/reactions/NPH NPH]
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* [http://bigg.ucsd.edu/universal/reactions/RBFKm RBFKm]
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* [http://bigg.ucsd.edu/universal/reactions/RIBFS RIBFS]
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* [http://bigg.ucsd.edu/universal/reactions/THMDP THMDP]
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* [http://bigg.ucsd.edu/universal/reactions/THMDPe THMDPe]
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* [http://bigg.ucsd.edu/universal/reactions/THMP THMP]
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* [http://bigg.ucsd.edu/universal/reactions/THMPe THMPe]
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* [http://bigg.ucsd.edu/universal/reactions/UDPGP UDPGP]
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* [http://bigg.ucsd.edu/universal/reactions/UDPGPpp UDPGPpp]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: common_name=Riboflavin metabolism}}
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{{#set: gene associated=B471_RS0105280}}
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{{#set: reaction found=8}}
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{{#set: in pathway=}}
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{{#set: total reaction=38}}
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{{#set: reconstruction category=manual}}
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{{#set: completion rate=21.0}}
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{{#set: reconstruction source=manual-missing_rxn_creator}}
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
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Latest revision as of 16:14, 21 March 2018

Pathway map00740

  • common_name:
    • Riboflavin metabolism
  • Synonym(s):

Reaction(s) found

8 reactions found over 38 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00740&oldid=6415"