Difference between revisions of "Map00860"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP3ex MDDCP3ex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein D,D-carboxypeptidase (...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860] == * common_name: ** Porphyrin and chlorophyll metabolism * Synonym(s): == Reactio...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP3ex MDDCP3ex] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Porphyrin and chlorophyll metabolism
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* common name:
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** Murein D,D-carboxypeptidase (murein5p5p) (periplasm)
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''23''' reactions found over '''106''' reactions in the full pathway
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** 1.0 [[h2o]][e] '''+''' 1.0 [[murein5p5p]][e] '''=>''' 1.0 [[ala__D]][e] '''+''' 1.0 [[murein5p4p]][e]
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* [[ACBIPGT]]
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* With common name(s):
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** 0 associated gene:
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** 1.0 H2O H2O[e] '''+''' 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] '''=>''' 1.0 D-Alanine[e] '''+''' 1.0 Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)[e]
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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== Genes associated with this reaction  ==
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* [[CPC2MT]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* [[B471_RS0101180]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[cljungdahlii]]
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*** [[manual-reaction_to_add_delete]]
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== Pathways  ==
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* [[CPC3MT]]
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* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
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** 0 associated gene:
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** '''14''' reactions found over '''27''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[manual-reaction_to_add_delete]]
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* Category: [[orthology]]
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* [[CPC4MT]]
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** Source: [[orthology-cljungdahlii]]
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** 0 associated gene:
−
*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[CPC6R]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[CPC8MM]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[CPPPGO]]
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** 1 associated gene(s):
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*** [[B471_RS0118845]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[G1SAT]]
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** 2 associated gene(s):
 +
*** [[B471_RS0117455]]
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*** [[B471_RS0107485]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GLUTRR]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108690]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GLUTRS]]
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** 1 associated gene(s):
 +
*** [[B471_RS0110825]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[GLYAT]]
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** 1 associated gene(s):
 +
*** [[B471_RS22400]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[HEMEOS]]
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** 1 associated gene(s):
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*** [[B471_RS0118070]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
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* [[LTHRK]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[NNDMBRT]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[PC11M]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105045]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[PC20M]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105050]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[PC8XM]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105060]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[PPBNGS]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108710]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
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* [[PPPGO]]
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** 1 associated gene(s):
 +
*** [[B471_RS23440]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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* [[SHCHD2]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[UPP3MT]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[UPP3S]]
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** 1 associated gene(s):
 +
*** [[B471_RS24310]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[UPPDC1]]
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** 1 associated gene(s):
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*** [[B471_RS0117740]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/ADCPS1 ADCPS1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADCPS2 ADCPS2]
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* [http://bigg.ucsd.edu/universal/reactions/ADCYRS ADCYRS]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADOCBIAH ADOCBIAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADOCBIK ADOCBIK]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADOCBLS ADOCBLS]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/APPLDHr APPLDHr]
 +
* [http://bigg.ucsd.edu/universal/reactions/BILIRBU BILIRBU]
 +
* [http://bigg.ucsd.edu/universal/reactions/BILIRED BILIRED]
 +
* [http://bigg.ucsd.edu/universal/reactions/BILIRED_1 BILIRED_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBIAT CBIAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBL2OR CBL2OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBLAT CBLAT]
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* [http://bigg.ucsd.edu/universal/reactions/CBLAT_DELETE CBLAT_DELETE]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBLATm CBLATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLADMT CHLADMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLASE CHLASE]
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* [http://bigg.ucsd.edu/universal/reactions/CHLASP CHLASP]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLBSP CHLBSP]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHLDADMT CHLDADMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHPHYS CHPHYS]
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* [http://bigg.ucsd.edu/universal/reactions/COCHL COCHL]
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* [http://bigg.ucsd.edu/universal/reactions/CODSCL4MT CODSCL4MT]
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* [http://bigg.ucsd.edu/universal/reactions/CODSCL5BMT CODSCL5BMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CODSCL5DA CODSCL5DA]
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* [http://bigg.ucsd.edu/universal/reactions/CODSCL8XI CODSCL8XI]
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* [http://bigg.ucsd.edu/universal/reactions/CPPPGO2 CPPPGO2]
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* [http://bigg.ucsd.edu/universal/reactions/CPPPGO_1 CPPPGO_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYRDAAT CYRDAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYRDAR2 CYRDAR2]
 +
* [http://bigg.ucsd.edu/universal/reactions/DVCHLDR DVCHLDR]
 +
* [http://bigg.ucsd.edu/universal/reactions/DVOCHR DVOCHR]
 +
* [http://bigg.ucsd.edu/universal/reactions/FCLT FCLT]
 +
* [http://bigg.ucsd.edu/universal/reactions/FCLT_1 FCLT_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/FCLTm FCLTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/FERO FERO]
 +
* [http://bigg.ucsd.edu/universal/reactions/FEROpp FEROpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/FEROt FEROt]
 +
* [http://bigg.ucsd.edu/universal/reactions/G1SAT_1 G1SAT_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTRR_1 GLUTRR_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTRS_1 GLUTRS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTRSm GLUTRSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
 +
* [http://bigg.ucsd.edu/universal/reactions/HEMEOSm HEMEOSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/HEMEOSm_1 HEMEOSm_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPMECY2 MPMECY2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPML MPML]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPML_1 MPML_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPOMC1 MPOMC1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPOMMM MPOMMM]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPOMOR MPOMOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MPOMT MPOMT]
 +
* [http://bigg.ucsd.edu/universal/reactions/PC17M PC17M]
 +
* [http://bigg.ucsd.edu/universal/reactions/PC6AR PC6AR]
 +
* [http://bigg.ucsd.edu/universal/reactions/PC6YM PC6YM]
 +
* [http://bigg.ucsd.edu/universal/reactions/POR_1 POR_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPBNGS_1 PPBNGS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPPGO3 PPPGO3]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPPGO_1 PPPGO_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPPGOm PPPGOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/R05219 R05219]
 +
* [http://bigg.ucsd.edu/universal/reactions/RZ5PP RZ5PP]
 +
* [http://bigg.ucsd.edu/universal/reactions/SHCHF SHCHF]
 +
* [http://bigg.ucsd.edu/universal/reactions/SHCHF_1 SHCHF_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/TFENFEOR TFENFEOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/THRPDC THRPDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A10r UGT1A10r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A1r UGT1A1r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A2r UGT1A2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A3r UGT1A3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A4r UGT1A4r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A5r UGT1A5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A6r UGT1A6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A7r UGT1A7r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UGT1A8r UGT1A8r]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPP1S UPP1S]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPP3MT_1 UPP3MT_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPP3S_1 UPP3S_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPPDC1_1 UPPDC1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPPDC2 UPPDC2]
 +
* [http://bigg.ucsd.edu/universal/reactions/UPPDC2_1 UPPDC2_1]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101431
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{{#set: common_name=Porphyrin and chlorophyll metabolism}}
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* EC Number : 3.4.16.4
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{{#set: reaction found=23}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=106}}
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{{#set: common name=Murein D,D-carboxypeptidase (murein5p5p) (periplasm)}}
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{{#set: completion rate=22.0}}
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{{#set: gene associated=B471_RS0101180}}
+
−
{{#set: in pathway=map00550}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 16:15, 21 March 2018

Pathway map00860

  • common_name:
    • Porphyrin and chlorophyll metabolism
  • Synonym(s):

Reaction(s) found

23 reactions found over 106 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00860&oldid=6467"