Difference between revisions of "Map00900"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRMICI PRMICI] == * direction: ** REVERSIBLE * common name: ** 1-(5-phosphoribosyl)-5-[(5-phosphori...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900] == * common_name: ** Terpenoid backbone biosynthesis * Synonym(s): == Reaction(s)...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRMICI PRMICI] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900] ==
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* direction:
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* common_name:
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** REVERSIBLE
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** Terpenoid backbone biosynthesis
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* common name:
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** 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''16''' reactions found over '''67''' reactions in the full pathway
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** 1.0 [[prfp]][c] '''<=>''' 1.0 [[prlp]][c]
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* [[ACACT1r]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c] '''<=>''' 1.0 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide[c]
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*** [[B471_RS0105350]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ACACT2r]]
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* [[B471_RS0118345]]
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** 2 associated gene(s):
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** [[pantograph]]-[[cljungdahlii]]
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*** [[B471_RS0110565]]
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** [[pantograph]]-[[bsubtilis]]
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*** [[B471_RS0115615]]
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** [[pantograph]]-[[aferrooxidans]]
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-bsubtilis]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [[ACACT3r]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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** 2 associated gene(s):
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* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
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*** [[B471_RS0110565]]
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** '''13''' reactions found over '''90''' reactions in the full pathway
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*** [[B471_RS0115615]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** 1 reconstruction source(s) associated:
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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* [[ACACT4r]]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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** 2 associated gene(s):
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== Reconstruction information  ==
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*** [[B471_RS0110565]]
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* Category: [[orthology]]
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*** [[B471_RS0115615]]
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** Source: [[orthology-cljungdahlii]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-bsubtilis]]
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** Source: [[orthology-bsubtilis]]
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* [[ACACT7r]]
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*** Tool: [[pantograph]]
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** 2 associated gene(s):
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS0115615]]
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*** Tool: [[pantograph]]
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*** [[B471_RS0110565]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[CDPMEK]]
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** 1 associated gene(s):
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*** [[B471_RS0107420]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[DMATT]]
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** 1 associated gene(s):
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*** [[B471_RS0101825]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[DMPPS]]
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** 1 associated gene(s):
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*** [[B471_RS0105795]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[DXPRIi]]
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** 1 associated gene(s):
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*** [[B471_RS0100735]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[DXPS]]
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** 1 associated gene(s):
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*** [[B471_RS0101820]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[FRTT]]
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** 1 associated gene(s):
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*** [[B471_RS0101825]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[GRTT]]
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** 1 associated gene(s):
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*** [[B471_RS0101825]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[MACCOAT]]
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** 2 associated gene(s):
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*** [[B471_RS0115615]]
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*** [[B471_RS0110565]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[MECDPS]]
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** 1 associated gene(s):
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*** [[B471_RS0104100]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[MEPCT]]
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** 1 associated gene(s):
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*** [[B471_RS0104105]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[OCTDPS]]
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** 1 associated gene(s):
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*** [[B471_RS0105645]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
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* [http://bigg.ucsd.edu/universal/reactions/CMK CMK]
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* [http://bigg.ucsd.edu/universal/reactions/CMS CMS]
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* [http://bigg.ucsd.edu/universal/reactions/DMATTx DMATTx]
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* [http://bigg.ucsd.edu/universal/reactions/DPMVD DPMVD]
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* [http://bigg.ucsd.edu/universal/reactions/DPMVDx DPMVDx]
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* [http://bigg.ucsd.edu/universal/reactions/DPPS DPPS]
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* [http://bigg.ucsd.edu/universal/reactions/DXRI DXRI]
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* [http://bigg.ucsd.edu/universal/reactions/DXS DXS]
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* [http://bigg.ucsd.edu/universal/reactions/FPPSh FPPSh]
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* [http://bigg.ucsd.edu/universal/reactions/GGDPR GGDPR]
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* [http://bigg.ucsd.edu/universal/reactions/GGDR GGDR]
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* [http://bigg.ucsd.edu/universal/reactions/GGPS_1 GGPS_1]
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* [http://bigg.ucsd.edu/universal/reactions/GPPSh GPPSh]
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* [http://bigg.ucsd.edu/universal/reactions/GRTTx GRTTx]
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* [http://bigg.ucsd.edu/universal/reactions/HMGCOAR HMGCOAR]
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* [http://bigg.ucsd.edu/universal/reactions/HMGCOARr HMGCOARr]
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* [http://bigg.ucsd.edu/universal/reactions/HMGCOARx HMGCOARx]
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* [http://bigg.ucsd.edu/universal/reactions/HMGCOAS HMGCOAS]
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* [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
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* [http://bigg.ucsd.edu/universal/reactions/IDIh IDIh]
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* [http://bigg.ucsd.edu/universal/reactions/IDS1 IDS1]
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* [http://bigg.ucsd.edu/universal/reactions/IPDDI IPDDI]
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* [http://bigg.ucsd.edu/universal/reactions/IPDDIx IPDDIx]
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* [http://bigg.ucsd.edu/universal/reactions/IPDPS_syn IPDPS_syn]
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* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
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* [http://bigg.ucsd.edu/universal/reactions/MCS MCS]
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* [http://bigg.ucsd.edu/universal/reactions/MEVK1 MEVK1]
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* [http://bigg.ucsd.edu/universal/reactions/MEVK1x MEVK1x]
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* [http://bigg.ucsd.edu/universal/reactions/MEVK2 MEVK2]
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* [http://bigg.ucsd.edu/universal/reactions/MEVK3 MEVK3]
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* [http://bigg.ucsd.edu/universal/reactions/MEVK4 MEVK4]
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* [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
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* [http://bigg.ucsd.edu/universal/reactions/PMEVK PMEVK]
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* [http://bigg.ucsd.edu/universal/reactions/PMEVKx PMEVKx]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common_name=Terpenoid backbone biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15469 15469]
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{{#set: reaction found=16}}
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* EC Number : 5.3.1.16
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{{#set: total reaction=67}}
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* MetaNetX (MNX) Equation : MNXR103169
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{{#set: completion rate=24.0}}
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* KEGG Reaction : R04640
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* BioCyc : META:PRIBFAICARPISOM-RXN
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase}}
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{{#set: gene associated=B471_RS0118345}}
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{{#set: in pathway=map01100|map00340|map01110|map01230}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:15, 21 March 2018

Pathway map00900

  • common_name:
    • Terpenoid backbone biosynthesis
  • Synonym(s):

Reaction(s) found

16 reactions found over 67 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00900&oldid=6430"