Difference between revisions of "PSD181"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EDD EDD] == * direction: ** LEFT-TO-RIGHT * common name: ** 6-phosphogluconate dehydratase * Synony...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/AKGt2r_CUT AKGt2r_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/EDD EDD] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/AKGt2r_CUT AKGt2r_CUT] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 6-phosphogluconate dehydratase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[6pgc]][c] '''=>''' 1.0 [[2ddg6p]][c] '''+''' 1.0 [[h2o]][c]
+
** 1.0 [[h]][e] '''+''' 1.0 [[akg]][e] '''=>''' 1.0 [[h]][c] '''+''' 1.0 [[akg]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 6-Phospho-D-gluconate[c] '''=>''' 1.0 2-Dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''+''' 1.0 H2O H2O[c]
+
** 1.0 H+[e] '''+''' 1.0 2-Oxoglutarate[e] '''=>''' 1.0 H+[c] '''+''' 1.0 2-Oxoglutarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0109235]]
+
* [[B471_RS23035]]
−
** [[pantograph]]-[[aferrooxidans]]
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** missing_rxn_creator
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
 
−
** '''20''' reactions found over '''69''' reactions in the full pathway
 
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 
−
** '''51''' reactions found over '''220''' reactions in the full pathway
 
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
−
** '''101''' reactions found over '''715''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
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*** [[aferrooxidans]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17277 17277]
 
−
* BioCyc : META:PGLUCONDEHYDRAT-RXN
 
−
* MetaNetX (MNX) Equation : MNXR97898
 
−
* KEGG Reaction : R02036
 
−
* EC Number : 4.2.1.12
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=6-phosphogluconate dehydratase}}
+
{{#set: gene associated=B471_RS23035}}
−
{{#set: gene associated=B471_RS0109235}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map01100|map00030|map01200|map01120}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
−
{{#set: reconstruction source=aferrooxidans}}
+

Revision as of 00:42, 21 March 2018

Reaction AKGt2r_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 h[e] + 1.0 akg[e] => 1.0 h[c] + 1.0 akg[c]
  • With common name(s):
    • 1.0 H+[e] + 1.0 2-Oxoglutarate[e] => 1.0 H+[c] + 1.0 2-Oxoglutarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=PSD181&oldid=4200"