Difference between revisions of "RNDR4"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS60 3OAS60] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-[acyl-carrier-protein]...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR4 RNDR4] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diphosphate reductas...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS60 3OAS60] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RNDR4 RNDR4] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)
+
** Ribonucleoside-diphosphate reductase (UDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[malACP]][c] '''+''' 1.0 [[butACP]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[ACP]][c] '''+''' 1.0 [[3ohexACP]][c]
+
** 1.0 [[trdrd]][c] '''+''' 1.0 [[udp]][c] '''=>''' 1.0 [[dudp]][c] '''+''' 1.0 [[trdox]][c] '''+''' 1.0 [[h2o]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Malonyl-[acyl-carrier protein][c] '''+''' 1.0 Butyryl-ACP (n-C4:0ACP)[c] '''+''' 1.0 H+[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Acyl carrier protein[c] '''+''' 1.0 3-Oxohexanoyl-[acyl-carrier protein][c]
+
** 1.0 Reduced thioredoxin[c] '''+''' 1.0 UDP C9H11N2O12P2[c] '''=>''' 1.0 DUDP C9H11N2O11P2[c] '''+''' 1.0 Oxidized thioredoxin[c] '''+''' 1.0 H2O H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0109650]]
+
* Gene: [[B471_RS0110140]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''43''' reactions found over '''182''' reactions in the full pathway
+
** '''68''' reactions found over '''244''' reactions in the full pathway
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
* [[map00480]]: [http://www.genome.jp/dbget-bin/www_bget?map00480 map00480]
−
** '''54''' reactions found over '''160''' reactions in the full pathway
+
** '''10''' reactions found over '''39''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''64''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR94963
+
* EC Number : 1.17.4.1
−
* EC Number : 2.3.1.86
+
* MetaNetX (MNX) Equation : MNXR104066
 +
* KEGG Reaction : R02018
 +
* BioCyc : META:UDPREDUCT-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase (UDP)}}
−
{{#set: gene associated=B471_RS0109650}}
+
{{#set: gene associated=B471_RS0110140}}
−
{{#set: in pathway=map01100|map01212|map00061}}
+
{{#set: in pathway=map01100|map00240|map00480|map00230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii}}
 

Latest revision as of 16:44, 21 March 2018

Reaction RNDR4

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase (UDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Reduced thioredoxin[c] + 1.0 UDP C9H11N2O12P2[c] => 1.0 DUDP C9H11N2O11P2[c] + 1.0 Oxidized thioredoxin[c] + 1.0 H2O H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.17.4.1
  • MetaNetX (MNX) Equation : MNXR104066
  • KEGG Reaction : R02018
  • BioCyc : META:UDPREDUCT-RXN




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