Difference between revisions of "SCYSDS"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] == * common_name: ** Butanoate metabolism * Synonym(s): == Reaction(s) found == '...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/SCYSDS SCYSDS] == * direction: ** LEFT-TO-RIGHT * common name: ** SUF Cysteine desulfuration * Syno...")
 
Line 1: Line 1:
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/SCYSDS SCYSDS] ==
−
* common_name:
+
* direction:
−
** Butanoate metabolism
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** SUF Cysteine desulfuration
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''21''' reactions found over '''156''' reactions in the full pathway
+
* With identifiers:
−
* [[ABTA]]
+
** 1.0 [[cys__L]][c] '''+''' 1.0 [[sufse]][c] '''=>''' 1.0 [[ala__L]][c] '''+''' 1.0 [[sufsesh]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[B471_RS0110025]]
+
** 1.0 L-Cysteine[c] '''+''' 1.0 SufSE sulfur acceptor complex[c] '''=>''' 1.0 L-Alanine[c] '''+''' 1.0 SufSE with bound sulfur[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[orthology-cljungdahlii]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-bsubtilis]]
+
== Pathways  ==
−
* [[ACACT1r]]
+
== Reconstruction information  ==
−
** 1 associated gene(s):
+
* Category: [[manual]]
−
*** [[B471_RS0105350]]
+
** Source: [[manual-reaction_to_add_delete]]
−
** 1 reconstruction source(s) associated:
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT2r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT3r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT4r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT7r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACALD]]
+
−
** 5 associated gene(s):
+
−
*** [[B471_RS0100095]]
+
−
*** [[B471_RS0110020]]
+
−
*** [[B471_RS0119455]]
+
−
*** [[B471_RS0113260]]
+
−
*** [[B471_RS0115620]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[ACHBS]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ACLS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108550]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[ACOAD1]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0108385]]
+
−
*** [[B471_RS0110365]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ASP1DC]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0116125]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[BTDD_RR]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115645]]
+
−
*** [[B471_RS0106740]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[BUTKr]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ECOAH1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ECOAH9ir]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115580]]
+
−
*** [[B471_RS0110785]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[HACD1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[HMGL]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108405]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MACCOAT]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[OCOAT1]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115600]]
+
−
*** [[B471_RS0115595]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[PBUTT]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[SSALx]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0100390]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AACOAT AACOAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACCT ACACCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACAS_2ahbut ACAS_2ahbut]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACLDC ACLDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOA40OR ACOA40OR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1f ACOAD1f]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1fm ACOAD1fm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOAD2 ACOAD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACTD ACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APLh APLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APLm APLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARGDh ARGDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BDH BDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BDHm BDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTS BTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BTS_nadph BTS_nadph]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BUTCT BUTCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FACOAL40im FACOAL40im]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHBDHx GHBDHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBNOx HBNOx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGCOAS HMGCOAS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HXCT HXCT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALDDH MALDDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MALEI MALEI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OBTFL OBTFL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OCOAT1m OCOAT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTh PCFPTh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PCFPTm PCFPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFL PFL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLACTm PFLACTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFLh PFLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSALxm SSALxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSALy SSALy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SSNOh SSNOh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCOAACTr SUCOAACTr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/VACOAI VACOAI]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Butanoate metabolism}}
+
* MetaNetX (MNX) Equation : MNXR104298
−
{{#set: reaction found=21}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: total reaction=156}}
+
{{#set: common name=SUF Cysteine desulfuration}}
−
{{#set: completion rate=13.0}}
+
{{#set: in pathway=}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-reaction_to_add_delete}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Latest revision as of 16:37, 21 March 2018

Reaction SCYSDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • SUF Cysteine desulfuration
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Cysteine[c] + 1.0 SufSE sulfur acceptor complex[c] => 1.0 L-Alanine[c] + 1.0 SufSE with bound sulfur[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR104298




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=SCYSDS&oldid=7472"