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Ectocarpus Subulatus Holobiont description

This wiki represent the metabolic network of Ectocarpus Subulatus and 10 Bacteria of the holobiont

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of ecto_bacteria results to a Genome scale Model containing 4342 reactions, 3507 metabolites, 2281 genes and 1500 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Tool: Pathway tools
      • Creation of a metabolic network containing 1661 reactions
  • Based on orthology data:
    • Tool: Pantograph
      • From template ARAGEM creation of a metabolic network containing: 440 reactions
  • Based on expertise:
      • 19318 reaction(s) added
  • Based on gap-filling:
    • Tool: meneco
      • 85 reaction(s) added


Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: