Difference between revisions of "Main Page"
From metabolic_network
(→Ectocarpus Subulatus Holobiont description) |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
| − | == | + | == Ectocarpus Subulatus Holobiont description == |
| + | This wiki represent the metabolic network of Ectocarpus Subulatus and 10 Bacteria of the holobiont | ||
| + | |||
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | ||
Model summary: [[MEDIA:summary.txt|summary]] | Model summary: [[MEDIA:summary.txt|summary]] | ||
| Line 26: | Line 28: | ||
** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
| − | * Send the filled form(s) to: | + | * Send the filled form(s) to: gem-aureme@inria.fr |
Latest revision as of 16:01, 2 October 2018
Ectocarpus Subulatus Holobiont description
This wiki represent the metabolic network of Ectocarpus Subulatus and 10 Bacteria of the holobiont
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of ecto_bacteria results to a Genome scale Model containing 4342 reactions, 3507 metabolites, 2281 genes and 1500 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 1661 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template ARAGEM creation of a metabolic network containing: 440 reactions
- Tool: Pantograph
- Based on expertise:
- 19318 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 85 reaction(s) added
- Tool: meneco
