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Latest revision as of 16:01, 2 October 2018

Ectocarpus Subulatus Holobiont description

This wiki represent the metabolic network of Ectocarpus Subulatus and 10 Bacteria of the holobiont

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of ecto_bacteria results to a Genome scale Model containing 4342 reactions, 3507 metabolites, 2281 genes and 1500 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Tool: Pathway tools
    • Creation of a metabolic network containing 1661 reactions
• Based on orthology data:
  • Tool: Pantograph
    • From template ARAGEM creation of a metabolic network containing: 440 reactions
• Based on expertise:
  • • 19318 reaction(s) added
• Based on gap-filling:
  • Tool: meneco
    • 85 reaction(s) added

File:Venn.png

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme@inria.fr