Main Page

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus_Siliculosus results to a Genome scale Model containing 1977 reactions, 2132 metabolites, 2281 genes and 1101 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Tool: Pathway tools
    • Creation of a metabolic network containing 1661 reactions
• Based on orthology data:
  • Tool: Pantograph
    • From template ARAGEM creation of a metabolic network containing: 440 reactions
• Based on expertise:
  • • 65 reaction(s) added
• Based on gap-filling:
  • Tool: meneco
    • 85 reaction(s) added

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme@inria.fr