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ECTOGEM description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus_Siliculosus results to a Genome scale Model containing 1977 reactions, 2132 metabolites, 2281 genes and 1101 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Tool: Pathway tools
      • Creation of a metabolic network containing 1661 reactions
  • Based on orthology data:
    • Tool: Pantograph
      • From template ARAGEM creation of a metabolic network containing: 440 reactions
  • Based on expertise:
      • 65 reaction(s) added
  • Based on gap-filling:
    • Tool: meneco
      • 85 reaction(s) added

Venn.png

Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: CONTACT_MAIL