Difference between revisions of "TRNAs-with-queuine"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA glycosylase ** DNA-(apu...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** DNA glycosylase
+
−
** DNA-(apurinic or apyrimidinic site) lyase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
+
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[BETAINE_ALDEHYDE]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a damaged DNA pyrimidine[c] '''=>''' 1 a DNA containing an apyrimidinic site[c]
+
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 betaine aldehyde[c] '''<=>''' 2 H+[c] '''+''' 1 glycine betaine[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-01_006350]]
+
* [[Ec-20_003790]]
−
** ESILICULOSUS_GENOME
+
** [[pantograph]]-[[aragem]]
−
***GO-TERM
+
−
* [[Ec-19_001460]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-16_004990]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-18_003720]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Ec-00_001490]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=DNA glycosylase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
−
{{#set: common name=DNA-(apurinic or apyrimidinic site) lyase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
−
{{#set: ec number=EC-4.2.99.18}}
+
* LIGAND-RXN:
−
{{#set: gene associated=Ec-01_006350|Ec-19_001460|Ec-16_004990|Ec-18_003720|Ec-00_001490}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
−
{{#set: in pathway=}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P17202 P17202]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P17445 P17445]
−
{{#set: reconstruction source=esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/P28237 P28237]
 +
** [http://www.uniprot.org/uniprot/P42757 P42757]
 +
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
 +
** [http://www.uniprot.org/uniprot/O24174 O24174]
 +
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
 +
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
 +
** [http://www.uniprot.org/uniprot/O22477 O22477]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.2.1.8}}
 +
{{#set: gene associated=Ec-20_003790}}
 +
{{#set: in pathway=BETSYN-PWY|CHOLINE-BETAINE-ANA-PWY|PWY-3722|PWY1F-353|PWY-7494}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 20:44, 17 March 2018

Reaction BADH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 H2O[c] + 1 betaine aldehyde[c] <=> 2 H+[c] + 1 glycine betaine[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway
  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




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