Difference between revisions of "RXN-16081"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** S-adenosyl-L-methionine:L-homocysteine S-methyltransferase
+
** trans, trans-farnesyl diphosphate biosynthesis
−
** S-adenosylmethionine-homocysteine S-methyltransferase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.1.1 EC-2.1.1]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** FPP biosynthesis
 +
** trans, trans-farnesyl diphosphate biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* [[FPPSYN-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 S-adenosyl-L-methionine[c] '''+''' 1 L-homocysteine[c] '''=>''' 1 L-methionine[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
+
*** [[Ec-07_006170]]
−
 
+
*** [[Ec-10_003020]]
−
== Genes associated with this reaction  ==
+
*** [[Ec-16_004330]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 2 reconstruction source(s) associated:
−
* [[Ec-06_000980]]
+
*** [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** [[orthology-aragem]]
−
***GO-TERM
+
* [[GPPSYN-RXN]]
−
* [[Ec-11_005000]]
+
** 12 associated gene(s):
−
** ESILICULOSUS_GENOME
+
*** [[Ec-07_006170]]
−
***GO-TERM
+
*** [[Ec-16_004330]]
−
** [[pantograph]]-[[aragem]]
+
*** [[Ec-08_002270]]
−
== Pathways  ==
+
*** [[Ec-10_003020]]
−
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
+
*** [[Ec-00_007350]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
*** [[Ec-14_006550]]
−
== Reconstruction information  ==
+
*** [[Ec-24_003910]]
−
* [[orthology]]:
+
*** [[Ec-26_003280]]
−
** [[pantograph]]:
+
*** [[Ec-21_000990]]
−
*** [[aragem]]
+
*** [[Ec-25_002110]]
−
* [[annotation]]:
+
*** [[Ec-17_001240]]
−
** [[pathwaytools]]:
+
*** [[Ec-18_000990]]
−
*** [[esiliculosus_genome]]
+
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[IPPISOM-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Ec-11_001030]]
 +
*** [[Ec-18_002690]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21820 21820]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5123 PWY-5123]
−
* LIGAND-RXN:
+
* ARACYC:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00650 R00650]
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5123 PWY-5123]
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.uniprot.org/uniprot/Q9M1W4 Q9M1W4]
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.uniprot.org/uniprot/Q9SDL7 Q9SDL7]
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=trans, trans-farnesyl diphosphate biosynthesis}}
−
{{#set: common name=S-adenosyl-L-methionine:L-homocysteine S-methyltransferase}}
+
{{#set: common name=FPP biosynthesis|trans, trans-farnesyl diphosphate biosynthesis}}
−
{{#set: common name=S-adenosylmethionine-homocysteine S-methyltransferase}}
+
{{#set: reaction found=3}}
−
{{#set: ec number=EC-2.1.1}}
+
{{#set: total reaction=3}}
−
{{#set: gene associated=Ec-06_000980|Ec-11_005000}}
+
{{#set: completion rate=100.0}}
−
{{#set: in pathway=PWY-702}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Revision as of 20:57, 17 March 2018

Pathway PWY-5123

  • taxonomic range:
  • common name:
    • trans, trans-farnesyl diphosphate biosynthesis
  • Synonym(s):
    • FPP biosynthesis
    • trans, trans-farnesyl diphosphate biosynthesis

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16081&oldid=11013"