Difference between revisions of "RXN-37"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-287987 TAX-287987]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5204 TAX-5204]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4762 TAX-4762]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-4890]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5794 TAX-5794]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
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** chorismate biosynthesis from 3-dehydroquinate
 
* Synonym(s):
 
* Synonym(s):
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** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
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** β-hydroxyacyl-ACP dehydrase
 
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** HDDase
 
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** β-hydroxyacyl-acyl carrier protein dehydratase
 
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** FabA
 
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** β-hydroxydecanoyl thiol ester dehydrase
 
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** β-hydroxydecanoate dehydrase
 
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** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D2-decenoyl-ACPs]][c]
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* [[2.5.1.19-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dec-2-enoyl-[acp][c]
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*** [[Ec-26_000800]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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*** [[orthology-aragem]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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** '''28''' reactions found over '''31''' reactions in the full pathway
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** 4 associated gene(s):
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** [[Ec-07_000550]]
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** '''20''' reactions found over '''31''' reactions in the full pathway
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*** [[Ec-26_004120]]
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* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
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*** [[Ec-02_006010]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Ec-14_005400]]
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== Reconstruction information  ==
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** 2 reconstruction source(s) associated:
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* [[gap-filling]]:
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*** [[annotation-esiliculosus_genome]]
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** [[meneco]]:
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*** [[orthology-aragem]]
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*** [[added for gapfilling]]
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* [[CHORISMATE-SYNTHASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_005820]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-7968]]
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** 1 associated gene(s):
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*** [[Ec-02_006010]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-02_006010]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SHIKIMATE-KINASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-11_000770]]
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*** [[Ec-02_005600]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: ec number=EC-2.3.1.86}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6163 PWY-6163]
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
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{{#set: taxonomic range=TAX-287987}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: taxonomic range=TAX-5204}}
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{{#set: reconstruction tool=meneco}}
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{{#set: taxonomic range=TAX-2836}}
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{{#set: reconstruction source=added for gapfilling}}
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{{#set: taxonomic range=TAX-4762}}
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{{#set: taxonomic range=TAX-4890}}
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{{#set: taxonomic range=TAX-5794}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=chorismate biosynthesis from 3-dehydroquinate}}
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{{#set: reaction found=6}}
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{{#set: total reaction=6}}
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{{#set: completion rate=100.0}}

Revision as of 22:12, 17 March 2018

Pathway PWY-6163

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links








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