Difference between revisions of "Ec-08 003540"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Aldolase-type TIM barrel...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** adenosylcobalamin salvage from cobinamide I
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** Aldolase-type TIM barrel
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** Indole-3-glycerol phosphate synthase
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** FIST domain, N-terminal
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** indole-3-glycerol-phosphate synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
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** vitamin B12 biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[BTUR2-RXN]]
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** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=COBALAMIN5PSYN-RXN COBALAMIN5PSYN-RXN]
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** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=COBINAMIDEKIN-RXN COBINAMIDEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=COBINPGUANYLYLTRANS-RXN COBINPGUANYLYLTRANS-RXN]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DMBPPRIBOSYLTRANS-RXN DMBPPRIBOSYLTRANS-RXN]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770]
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* [[Ec-03_003850]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-27_004020]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-08_003030]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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* [[Ec-08_003020]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-11_002820]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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{{#set: taxonomic range=TAX-1224}}
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* LIGAND-RXN:
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{{#set: common name=adenosylcobalamin salvage from cobinamide I}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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{{#set: common name=vitamin B12 biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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{{#set: reaction not found=6}}
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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{{#set: completion rate=17.0}}
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Aldolase-type TIM barrel}}
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{{#set: common name=Indole-3-glycerol phosphate synthase}}
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{{#set: common name=FIST domain, N-terminal}}
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{{#set: common name=indole-3-glycerol-phosphate synthase}}
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{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=Ec-03_003850|Ec-27_004020|Ec-08_003030|Ec-08_003020|Ec-11_002820}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 22:18, 17 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Aldolase-type TIM barrel
    • Indole-3-glycerol phosphate synthase
    • FIST domain, N-terminal
    • indole-3-glycerol-phosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links






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