Difference between revisions of "RXN-1641"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE] == * smiles: ** CC4(OC(OP(=O)(...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)
 +
* inchi key:
 +
** InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L
 
* common name:
 
* common name:
−
** malate dehydrogenase (decarboxylating) (NAD+)
+
** GDP-4-dehydro-6-deoxy-α-D-mannose
−
* ec number:
+
* molecular weight:
−
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
+
** 585.314   
−
** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** GDP-4-keto-6-deoxymannose
 +
** GDP-4-keto-6-deoxy-α-D-mannose
 +
** GDP-4-dehydro-6-deoxy-α-D-talose
 +
** GDP-4-oxo-6-deoxy-α-D-mannose
 +
** GDP-4-dehydro-α-D-rhamnose
 +
** GDP-4-dehydro-6-deoxymannose
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[1.1.1.271-RXN]]
−
** 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
== Reaction(s) known to produce the compound ==
−
* With common name(s):
+
* [[GDPMANDEHYDRA-RXN]]
−
** 1 H+[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c]
+
== Reaction(s) of unknown directionality ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Ec-01_003680]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-07_002060]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
* [[Ec-07_002070]]
+
−
** ESILICULOSUS_GENOME
+
−
***GO-TERM
+
−
== Pathways  ==
+
−
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
+
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
+
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
+
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* BIGG : 37116
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
+
* PUBCHEM:
−
* LIGAND-RXN:
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25243979 25243979]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
+
* HMDB : HMDB01346
−
* UNIPROT:
+
* LIGAND-CPD:
−
** [http://www.uniprot.org/uniprot/P13187 P13187]
+
** [http://www.genome.jp/dbget-bin/www_bget?C01222 C01222]
−
** [http://www.uniprot.org/uniprot/P13155 P13155]
+
* CHEBI:
−
** [http://www.uniprot.org/uniprot/P13156 P13156]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57964 57964]
−
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
+
* METABOLIGHTS : MTBLC57964
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: smiles=CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)}}
−
{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
+
{{#set: inchi key=InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L}}
−
{{#set: ec number=EC-1.1.1.38}}
+
{{#set: common name=GDP-4-dehydro-6-deoxy-α-D-mannose}}
−
{{#set: ec number=EC-4.1.1.3}}
+
{{#set: molecular weight=585.314    }}
−
{{#set: gene associated=Ec-01_003680|Ec-07_002060|Ec-07_002070}}
+
{{#set: common name=GDP-4-keto-6-deoxymannose|GDP-4-keto-6-deoxy-α-D-mannose|GDP-4-dehydro-6-deoxy-α-D-talose|GDP-4-oxo-6-deoxy-α-D-mannose|GDP-4-dehydro-α-D-rhamnose|GDP-4-dehydro-6-deoxymannose}}
−
{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
+
{{#set: consumed by=1.1.1.271-RXN}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: produced by=GDPMANDEHYDRA-RXN}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Revision as of 22:33, 17 March 2018

Metabolite GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE

  • smiles:
    • CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)
  • inchi key:
    • InChIKey=PNHLMHWWFOPQLK-BKUUWRAGSA-L
  • common name:
    • GDP-4-dehydro-6-deoxy-α-D-mannose
  • molecular weight:
    • 585.314
  • Synonym(s):
    • GDP-4-keto-6-deoxymannose
    • GDP-4-keto-6-deoxy-α-D-mannose
    • GDP-4-dehydro-6-deoxy-α-D-talose
    • GDP-4-oxo-6-deoxy-α-D-mannose
    • GDP-4-dehydro-α-D-rhamnose
    • GDP-4-dehydro-6-deoxymannose

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • BIGG : 37116
  • PUBCHEM:
  • HMDB : HMDB01346
  • LIGAND-CPD:
  • CHEBI:
  • METABOLIGHTS : MTBLC57964
"CC4(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))C(O)C(O)C(=O)4)" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1641&oldid=13489"