Difference between revisions of "ExchangeSeed CO+2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CARBON-DIOXIDE CARBON-DIOXIDE] == * smiles: ** C(=O)=O * inchi key: ** InChIKey=CURLTUGMZLYLDI-...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGDPKIN-RXN DGDPKIN-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CARBON-DIOXIDE CARBON-DIOXIDE] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
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** C(=O)=O
 +
* inchi key:
 +
** InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N
 
* common name:
 
* common name:
−
** nucleoside diphosphate kinase
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** CO2
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** Nucleoside diphosphate kinase
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* molecular weight:
−
* ec number:
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** 44.01   
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** carbonic anhydride
 +
** carbonic acid gas
 +
** carbon dioxide
  
−
== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[DETHIOBIOTIN-SYN-RXN]]
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** 1 [[DGDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DGTP]][c] '''+''' 1 [[ADP]][c]
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* [[TransportSeed_CARBON-DIOXIDE]]
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* With common name(s):
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 dGDP[c] '''+''' 1 ATP[c] '''=>''' 1 dGTP[c] '''+''' 1 ADP[c]
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* [[AIRCARBOXY-RXN]]
−
 
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== Reaction(s) known to produce the compound ==
−
== Genes associated with this reaction  ==
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* [[RXN-16615]]
−
Genes have been associated with this reaction based on different elements listed below.
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* [[UDP-GLUCURONATE-DECARBOXYLASE-RXN]]
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* [[Ec-03_001380]]
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* [[RXN0-1461]]
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** ESILICULOSUS_GENOME
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* [[RXN-10828]]
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***GO-TERM
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* [[PREPHENATEDEHYDROG-RXN]]
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* [[Ec-26_003930]]
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* [[QUINOPRIBOTRANS-RXN]]
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** ESILICULOSUS_GENOME
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* [[N-CARBAMOYLPUTRESCINE-AMIDASE-RXN]]
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***GO-TERM
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* [[2.3.1.179-RXN]]
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* [[Ec-11_005170]]
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* [[RXN-11210]]
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** ESILICULOSUS_GENOME
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* [[SAMDECARB-RXN]]
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***GO-TERM
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* [[1.14.11.2-RXN]]
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* [[Ec-07_000140]]
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* [[UROGENDECARBOX-RXN]]
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** ESILICULOSUS_GENOME
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* [[RXN0-2141]]
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***GO-TERM
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* [[RXN-13158]]
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* [[Ec-04_001140]]
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* [[RXN-3142]]
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** ESILICULOSUS_GENOME
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* [[TransportSeed_CARBON-DIOXIDE]]
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***GO-TERM
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* [[PYFLAVOXRE-RXN]]
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** [[pantograph]]-[[aragem]]
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* [[PEPCARBOXYKIN-RXN]]
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* [[Ec-22_003280]]
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* [[RXN-9539]]
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** ESILICULOSUS_GENOME
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* [[RXN-9535]]
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***GO-TERM
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* [[RXN-6201]]
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* [[Ec-11_004330]]
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* [[ORNDECARBOX-RXN]]
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** ESILICULOSUS_GENOME
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* [[BETA-UREIDOPROPIONASE-RXN]]
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***EC-NUMBER
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* [[RXN-7645]]
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** [[pantograph]]-[[aragem]]
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* [[NARINGENIN-CHALCONE-SYNTHASE-RXN]]
−
== Pathways  ==
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* [[ACETOOHBUTSYN-RXN]]
−
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
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* [[RXN1G-445]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[RXN-7648]]
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* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
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* [[P-PANTOCYSDECARB-RXN]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[RXN66-23]]
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* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
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* [[KETOISOCAPROATE-RXN]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[RXN1G-368]]
−
== Reconstruction information  ==
+
* [[RXN490-3641]]
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* [[orthology]]:
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* [[RXN-10734]]
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** [[pantograph]]:
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* [[RXN-9632]]
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*** [[aragem]]
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* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
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* [[annotation]]:
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* [[RXN-9523]]
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** [[pathwaytools]]:
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* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
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*** [[esiliculosus_genome]]
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* [[RXN-9527]]
 +
* [[RXN-16079]]
 +
* [[RXN-113]]
 +
* [[RXN-9952]]
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* [[RXN-7800]]
 +
* [[ACETOLACTSYN-RXN]]
 +
* [[RXN-10815]]
 +
* [[RXN-5682]]
 +
* [[6PGLUCONDEHYDROG-RXN]]
 +
* [[RXN-9648]]
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* [[MALONYL-COA-DECARBOXYLASE-RXN]]
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* [[RXN-7790]]
 +
* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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* [[RXN-12539]]
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* [[RXN-7775]]
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* [[OXALODECARB-RXN]]
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* [[RXN-13431]]
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* [[RXN-16081]]
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* [[RXN-16082]]
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* [[RXN0-5222]]
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* [[RXN-6081]]
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* [[7KAPSYN-RXN]]
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* [[MALIC-NADP-RXN]]
 +
* [[TYROSINE-DECARBOXYLASE-RXN]]
 +
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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* [[RXN-9654]]
 +
* [[RXN-2902]]
 +
* [[RXN-14972]]
 +
* [[RXN-115]]
 +
* [[RXN-9531]]
 +
* [[RXN-9653]]
 +
* [[RXN-9652]]
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* [[RXN-9651]]
 +
* [[RXN-9650]]
 +
* [[PYRUVDEH-RXN]]
 +
* [[HEMN-RXN]]
 +
* [[2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN]]
 +
* [[RXN-10658]]
 +
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
 +
* [[2OXOGLUTARATEDEH-RXN]]
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* [[RXN-16629]]
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* [[RXN-11403]]
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* [[RXN-10654]]
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* [[RXN-16094]]
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* [[RXN-16621]]
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* [[RXN66-470]]
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* [[RXN-16625]]
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* [[RXN-3341]]
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* [[2OXOGLUTDECARB-RXN]]
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* [[RXN-13295]]
 +
* [[RXN-602]]
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* [[1.1.1.39-RXN]]
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* [[RXN-16016]]
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* [[RXN1G-499]]
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* [[IGPSYN-RXN]]
 +
* [[RXN66-18]]
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* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
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* [[RXN1F-93]]
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* [[RXN0-1134]]
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* [[RXN-6550]]
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* [[1.14.11.18-RXN]]
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* [[1.2.1.25-RXN]]
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* [[RXN-11474]]
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* [[ARGININE-2-MONOOXYGENASE-RXN]]
 +
* [[RXN-11479]]
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* [[RXN-12583]]
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* [[DIAMINOPIMDECARB-RXN]]
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* [[RXN-527]]
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* [[DXS-RXN]]
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* [[OROTPDECARB-RXN]]
 +
* [[RXN-11484]]
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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* [[RXN-13442]]
 +
* [[RXN-171]]
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* [[RXN-8450]]
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* [[RXN-5641]]
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* [[RXN-7745]]
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* [[RXN-10059]]
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* [[RXN-2541]]
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* [[RXN-7922]]
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* [[CYCLOHEXADIENYL-DEHYDROGENASE-RXN]]
 +
* [[RXN66-313]]
 +
* [[RXN66-318]]
 +
* [[3-OXOACYL-ACP-SYNTH-RXN]]
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* [[HISTIDINE-DECARBOXYLASE-RXN]]
 +
* [[RXN-14986]]
 +
* [[RXN3O-1803]]
 +
* [[RXN1F-168]]
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* [[RXN1F-162]]
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* [[RXN-13322]]
 +
* [[RXN1F-165]]
 +
* [[RXN1F-167]]
 +
* [[RXN-9516]]
 +
* [[RXN1F-163]]
 +
== Reaction(s) of unknown directionality ==
 +
* [[ISOCITDEH-RXN]]
 +
* [[RXN0-5224]]
 +
* [[GCVMULTI-RXN]]
 +
* [[2.3.1.41-RXN]]
 +
* [[RXN-13926]]
 +
* [[CARBODEHYDRAT-RXN]]
 +
* [[1.1.1.170-RXN]]
 +
* [[RXN1G-460]]
 +
* [[PREPHENATEDEHYDRAT-RXN]]
 +
* [[RXN-8349_PLANTCYC]]
 +
* [[FATTY-ACID-SYNTHASE-RXN]]
 +
* [[ExchangeSeed_CARBON-DIOXIDE]]
 +
* [[PREPHENATE-DEHYDROGENASE-NADP+-RXN]]
 +
* [[1.2.4.4-RXN]]
 +
* [[2KETO-3METHYLVALERATE-RXN]]
 +
* [[PYRUFLAVREDUCT-RXN]]
 +
* [[FATTY-ACYL-COA-SYNTHASE-RXN]]
 +
* [[2.7.8.23-RXN]]
 +
* [[RXN-8642]]
 +
* [[RXN-1744]]
 +
* [[RXN-14476]]
 +
* [[GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.]]
 +
* [[GCVP-RXN]]
 +
* [[RXN-10642]]
 +
* [[METHYLVALERATE-RXN]]
 +
* [[CARBAMATE-KINASE-RXN]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UM-BBD-CPD : c0131
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27690 27690]
+
* CAS : 124-38-9
−
* LIGAND-RXN:
+
* BIGG : 33506
−
** [http://www.genome.jp/dbget-bin/www_bget?R01857 R01857]
+
* PUBCHEM:
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=280 280]
−
{{#set: common name=nucleoside diphosphate kinase}}
+
* HMDB : HMDB01967
−
{{#set: common name=Nucleoside diphosphate kinase}}
+
* LIGAND-CPD:
−
{{#set: ec number=EC-2.7.4.6}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C00011 C00011]
−
{{#set: gene associated=Ec-03_001380|Ec-26_003930|Ec-11_005170|Ec-07_000140|Ec-04_001140|Ec-22_003280|Ec-11_004330}}
+
* CHEMSPIDER:
−
{{#set: in pathway=PWY-7222|PWY-7224|PWY-7226}}
+
** [http://www.chemspider.com/Chemical-Structure.274.html 274]
−
{{#set: reconstruction category=orthology}}
+
* CHEBI:
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16526 16526]
−
{{#set: reconstruction source=aragem}}
+
* METABOLIGHTS : MTBLC16526
−
{{#set: reconstruction category=annotation}}
+
{{#set: smiles=C(=O)=O}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: inchi key=InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: common name=CO2}}
 +
{{#set: molecular weight=44.01    }}
 +
{{#set: common name=carbonic anhydride|carbonic acid gas|carbon dioxide}}
 +
{{#set: consumed by=DETHIOBIOTIN-SYN-RXN|TransportSeed_CARBON-DIOXIDE|RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN|AIRCARBOXY-RXN}}
 +
{{#set: produced by=RXN-16615|UDP-GLUCURONATE-DECARBOXYLASE-RXN|RXN0-1461|RXN-10828|PREPHENATEDEHYDROG-RXN|QUINOPRIBOTRANS-RXN|N-CARBAMOYLPUTRESCINE-AMIDASE-RXN|2.3.1.179-RXN|RXN-11210|SAMDECARB-RXN|1.14.11.2-RXN|UROGENDECARBOX-RXN|RXN0-2141|RXN-13158|RXN-3142|TransportSeed_CARBON-DIOXIDE|PYFLAVOXRE-RXN|PEPCARBOXYKIN-RXN|RXN-9539|RXN-9535|RXN-6201|ORNDECARBOX-RXN|BETA-UREIDOPROPIONASE-RXN|RXN-7645|NARINGENIN-CHALCONE-SYNTHASE-RXN|ACETOOHBUTSYN-RXN|RXN1G-445|RXN-7648|P-PANTOCYSDECARB-RXN|RXN66-23|KETOISOCAPROATE-RXN|RXN1G-368|RXN490-3641|RXN-10734|RXN-9632|SERINE-C-PALMITOYLTRANSFERASE-RXN|RXN-9523|DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN|RXN-9527|RXN-16079|RXN-113|RXN-9952|RXN-7800|ACETOLACTSYN-RXN|RXN-10815|RXN-5682|6PGLUCONDEHYDROG-RXN|RXN-9648|MALONYL-COA-DECARBOXYLASE-RXN|RXN-7790|2-KETO-ADIPATE-DEHYDROG-RXN|RXN-12539|RXN-7775|OXALODECARB-RXN|RXN-13431|RXN-16081|RXN-16082|RXN0-5222|RXN-6081|7KAPSYN-RXN|MALIC-NADP-RXN|TYROSINE-DECARBOXYLASE-RXN|4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN|RXN-9654|RXN-2902|RXN-14972|RXN-115|RXN-9531|RXN-9653|RXN-9652|RXN-9651|RXN-9650|PYRUVDEH-RXN|HEMN-RXN|2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN|RXN-10658|NARINGENIN-3-DIOXYGENASE-RXN|2OXOGLUTARATEDEH-RXN|RXN-16629|RXN-11403|RXN-10654|RXN-16094|RXN-16621|RXN66-470|RXN-16625|RXN-3341|2OXOGLUTDECARB-RXN|RXN-13295|RXN-602|1.1.1.39-RXN|RXN-16016|RXN1G-499|IGPSYN-RXN|RXN66-18|PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|RXN1F-93|RXN0-1134|RXN-6550|1.14.11.18-RXN|1.2.1.25-RXN|RXN-11474|ARGININE-2-MONOOXYGENASE-RXN|RXN-11479|RXN-12583|DIAMINOPIMDECARB-RXN|RXN-527|DXS-RXN|OROTPDECARB-RXN|RXN-11484|3-OXOACYL-ACP-SYNTH-BASE-RXN|RXN-13442|RXN-171|RXN-8450|RXN-5641|RXN-7745|RXN-10059|RXN-2541|RXN-7922|CYCLOHEXADIENYL-DEHYDROGENASE-RXN|RXN66-313|RXN66-318|3-OXOACYL-ACP-SYNTH-RXN|HISTIDINE-DECARBOXYLASE-RXN|RXN-14986|RXN3O-1803|RXN1F-168|RXN1F-162|RXN-13322|RXN1F-165|RXN1F-167|RXN-9516|RXN1F-163}}
 +
{{#set: reversible reaction associated=ISOCITDEH-RXN|RXN0-5224|GCVMULTI-RXN|2.3.1.41-RXN|RXN-13926|CARBODEHYDRAT-RXN|1.1.1.170-RXN|RXN1G-460|PREPHENATEDEHYDRAT-RXN|RXN-8349_PLANTCYC|FATTY-ACID-SYNTHASE-RXN|ExchangeSeed_CARBON-DIOXIDE|PREPHENATE-DEHYDROGENASE-NADP+-RXN|1.2.4.4-RXN|2KETO-3METHYLVALERATE-RXN|PYRUFLAVREDUCT-RXN|FATTY-ACYL-COA-SYNTHASE-RXN|2.7.8.23-RXN|RXN-8642|RXN-1744|RXN-14476|GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.|GCVP-RXN|RXN-10642|METHYLVALERATE-RXN|CARBAMATE-KINASE-RXN}}

Revision as of 21:51, 17 March 2018

Metabolite CARBON-DIOXIDE

  • smiles:
    • C(=O)=O
  • inchi key:
    • InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N
  • common name:
    • CO2
  • molecular weight:
    • 44.01
  • Synonym(s):
    • carbonic anhydride
    • carbonic acid gas
    • carbon dioxide

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • UM-BBD-CPD : c0131
  • CAS : 124-38-9
  • BIGG : 33506
  • PUBCHEM:
  • HMDB : HMDB01967
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC16526





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