Difference between revisions of "Ec-09 002720"

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(Created page with "Category:Gene == Gene Ec-05_000260 == * left end position: ** 711834 * transcription direction: ** NEGATIVE * right end position: ** 719400 * centisome position: ** 7.8193...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** A...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-05_000260 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATINE-DEIMINASE-RXN AGMATINE-DEIMINASE-RXN] ==
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* left end position:
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* direction:
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** 711834
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Agmatine deiminase
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* right end position:
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* ec number:
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** 719400
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** [http://enzyme.expasy.org/EC/3.5.3.12 EC-3.5.3.12]
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* centisome position:
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** 7.819341   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0249_0032
 
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** Esi0249_0032
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ACID-PHOSPHATASE-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[CPD-597]][c] '''+''' 1 [[AMMONIUM]][c]
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***go-term
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* With common name(s):
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* [[RXN-5822]]
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** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 N-carbamoylputrescine[c] '''+''' 1 ammonium[c]
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** esiliculosus_genome
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***go-term
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6348]]
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* [[Ec-02_001540]]
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* [[PWY-5083]]
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** ESILICULOSUS_GENOME
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* [[NADPHOS-DEPHOS-PWY]]
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***EC-NUMBER
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* [[NAD-BIOSYNTHESIS-II]]
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== Pathways ==
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* [[PWY-43]], putrescine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-43 PWY-43]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEG-III-PWY ARGDEG-III-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=711834}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
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{{#set: right end position=719400}}
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* LIGAND-RXN:
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{{#set: centisome position=7.819341    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
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{{#set: common name=Esi_0249_0032|Esi0249_0032}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ACID-PHOSPHATASE-RXN|RXN-5822}}
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{{#set: common name=Agmatine deiminase}}
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{{#set: pathway associated=PWY-6348|PWY-5083|NADPHOS-DEPHOS-PWY|NAD-BIOSYNTHESIS-II}}
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{{#set: ec number=EC-3.5.3.12}}
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{{#set: gene associated=Ec-02_001540}}
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{{#set: in pathway=PWY-43|ARGDEG-III-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 21:54, 17 March 2018

Reaction AGMATINE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Agmatine deiminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 N-carbamoylputrescine[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-43, putrescine biosynthesis II: PWY-43
    • 2 reactions found over 3 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): ARGDEG-III-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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