Difference between revisions of "Ec-20 002090"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 3-oxo-decanoyl-[acyl-carrier protein] synthase
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** C4 photosynthetic carbon assimilation cycle, NAD-ME type
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** Beta-ketoacyl synthase, N-terminal
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** Thiolase-like, subgroup
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** beta-ketoacyl synthase, partial
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** 3-oxoacyl-[acyl-carrier-protein] synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, NAD-ME type
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''9''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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* [[1.1.1.39-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 an octanoyl-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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*** [[Ec-01_003680]]
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*** [[Ec-07_002070]]
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== Genes associated with this reaction  ==
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*** [[Ec-07_002060]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-12_000640]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Ec-27_003480]]
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*** [[Ec-01_011040]]
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** ESILICULOSUS_GENOME
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-12_000650]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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* [[ASPAMINOTRANS-RXN]]
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***GO-TERM
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** 3 associated gene(s):
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** [[pantograph]]-[[aragem]]
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*** [[Ec-03_003270]]
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** [[pantograph]]-[[aragem]]
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*** [[Ec-01_007480]]
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* [[Ec-27_002090]]
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*** [[Ec-23_003500]]
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** ESILICULOSUS_GENOME
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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*** [[orthology-aragem]]
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** [[pantograph]]-[[aragem]]
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* [[MALATE-DEH-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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*** [[Ec-10_006200]]
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** '''28''' reactions found over '''31''' reactions in the full pathway
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*** [[Ec-02_003100]]
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== Reconstruction information  ==
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** 2 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[orthology-aragem]]
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*** [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* [[PEPCARBOX-RXN]]
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* Category: [[annotation]]
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** 1 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-28_003470]]
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*** Tool: [[pathwaytools]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-18_001310]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-13697]]
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** 3 associated gene(s):
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*** [[Ec-01_007480]]
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*** [[Ec-23_003500]]
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*** [[Ec-03_003270]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-13698]]
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** 1 associated gene(s):
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*** [[Ec-01_011040]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN0-5224]]
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** 8 associated gene(s):
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*** [[Ec-03_001960]]
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*** [[Ec-10_002770]]
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*** [[Ec-06_004120]]
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*** [[Ec-05_001290]]
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*** [[Ec-27_005680]]
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*** [[Ec-07_004610]]
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*** [[Ec-22_001150]]
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*** [[Ec-16_004700]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] synthase}}
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
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{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
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{{#set: common name=C4 photosynthesis, NAD-ME type}}
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{{#set: common name=Thiolase-like, subgroup}}
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{{#set: reaction found=9}}
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{{#set: common name=beta-ketoacyl synthase, partial}}
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{{#set: total reaction=9}}
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{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
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{{#set: completion rate=100.0}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: gene associated=Ec-12_000640|Ec-27_003480|Ec-12_000650|Ec-27_002090}}
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{{#set: in pathway=PWY-5971}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:11, 21 March 2018

Pathway PWY-7115

  • taxonomic range:
  • common name:
    • C4 photosynthetic carbon assimilation cycle, NAD-ME type
  • Synonym(s):
    • C4 photosynthesis, NAD-ME type

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-20_002090&oldid=16230"