Difference between revisions of "RXN-17780"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.168-RXN 2.3.1.168-RXN] == * direction: ** REVERSIBLE * common name: ** Branched chain alpha-k...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.168-RXN 2.3.1.168-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** Branched chain alpha-keto acid dehydrogenase E1 beta subunit
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** tRNA charging
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.168 EC-2.3.1.168]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''21''' reactions found over '''21''' reactions in the full pathway
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** 1 [[BCAA-dehydrogenase-DH-lipoyl]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CO-A]][c]
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* [[ALANINE--TRNA-LIGASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 an [apo BCAA dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 isobutanoyl-CoA[c] '''<=>''' 1 an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylpropanoyl]dihydrolipoyl-L-lysine[c] '''+''' 1 coenzyme A[c]
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*** [[Ec-20_000890]]
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*** [[Ec-07_007070]]
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== Genes associated with this reaction  ==
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*** [[Ec-01_006770]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-06_009010]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[ARGININE--TRNA-LIGASE-RXN]]
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***AUTOMATED-NAME-MATCH
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** 2 associated gene(s):
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== Pathways  ==
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*** [[Ec-01_003640]]
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* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5046 PWY-5046]
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*** [[Ec-03_001410]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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* [[ASPARAGINE--TRNA-LIGASE-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 1 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-16_001810]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ASPARTATE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-06_003810]]
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*** [[Ec-19_005440]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[CYSTEINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-10_004180]]
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*** [[Ec-02_002270]]
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*** [[Ec-12_001440]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLURS-RXN]]
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** 1 associated gene(s):
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*** [[Ec-06_008480]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLUTAMINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000780]]
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*** [[Ec-17_003970]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLYCINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-07_006780]]
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*** [[Ec-07_006790]]
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*** [[Ec-14_006280]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[HISTIDINE--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_004790]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-12_001710]]
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*** [[Ec-06_008740]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[LEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-12_001400]]
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*** [[Ec-06_008730]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[LYSINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-19_000900]]
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*** [[Ec-01_005790]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[METHIONINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-16_002540]]
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*** [[Ec-18_004570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-15_003330]]
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*** [[Ec-06_008260]]
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*** [[Ec-02_005310]]
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*** [[Ec-27_001900]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PROLINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-26_002190]]
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*** [[Ec-08_005570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-16165]]
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** 2 associated gene(s):
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*** [[Ec-16_002540]]
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*** [[Ec-18_004570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[SERINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-24_004300]]
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*** [[Ec-08_002360]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[THREONINE--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-05_005060]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_005870]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[TYROSINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-18_001870]]
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*** [[Ec-01_009160]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[VALINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-08_004480]]
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*** [[Ec-12_005070]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R02662 R02662]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=Branched chain alpha-keto acid dehydrogenase E1 beta subunit}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-2.3.1.168}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: gene associated=Ec-06_009010}}
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{{#set: common name=tRNA charging}}
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{{#set: in pathway=PWY-5046}}
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{{#set: reaction found=21}}
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{{#set: reconstruction category=annotation}}
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{{#set: total reaction=21}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:11, 21 March 2018

Pathway TRNA-CHARGING-PWY

Reaction(s) found

21 reactions found over 21 reactions in the full pathway

Reaction(s) not found

External links




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