Difference between revisions of "PWY-5143"

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(Created page with "Category:Gene == Gene Ec-26_002800 == * left end position: ** 3078525 * transcription direction: ** POSITIVE * right end position: ** 3082621 * centisome position: ** 46.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase bet...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-26_002800 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
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* left end position:
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* direction:
−
** 3078525
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
−
** POSITIVE
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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* right end position:
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** Tryptophan synthase, beta chain
−
** 3082621
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** Tryptophan synthase (alpha / beta chains)
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* centisome position:
+
* ec number:
−
** 46.7623   
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** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
 
* Synonym(s):
 
* Synonym(s):
−
** Esi_0347_0034
 
−
** Esi0347_0034
 
  
−
== Reactions associated ==
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== Reaction Formula ==
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* [[3.4.25.1-RXN]]
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* With identifiers:
−
** esiliculosus_genome
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
−
***automated-name-match
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* With common name(s):
−
== Pathways associated ==
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 L-serine[c] '''=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-00_008830]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-17_002680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_004010]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_002800]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-24_002360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-27_001950]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_007490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-01_012080]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3078525}}
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* RHEA:
−
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
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{{#set: right end position=3082621}}
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* LIGAND-RXN:
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{{#set: centisome position=46.7623    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
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{{#set: common name=Esi_0347_0034|Esi0347_0034}}
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* UNIPROT:
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{{#set: reaction associated=3.4.25.1-RXN}}
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** [http://www.uniprot.org/uniprot/P11081 P11081]
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** [http://www.uniprot.org/uniprot/P14671 P14671]
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** [http://www.uniprot.org/uniprot/P13228 P13228]
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** [http://www.uniprot.org/uniprot/P18284 P18284]
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** [http://www.uniprot.org/uniprot/P43759 P43759]
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** [http://www.uniprot.org/uniprot/O84172 O84172]
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** [http://www.uniprot.org/uniprot/P11080 P11080]
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** [http://www.uniprot.org/uniprot/P16608 P16608]
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** [http://www.uniprot.org/uniprot/P18285 P18285]
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** [http://www.uniprot.org/uniprot/P16706 P16706]
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** [http://www.uniprot.org/uniprot/P12290 P12290]
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** [http://www.uniprot.org/uniprot/P42391 P42391]
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** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
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** [http://www.uniprot.org/uniprot/P12291 P12291]
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** [http://www.uniprot.org/uniprot/P42389 P42389]
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** [http://www.uniprot.org/uniprot/Q60179 Q60179]
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** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
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** [http://www.uniprot.org/uniprot/P07600 P07600]
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** [http://www.uniprot.org/uniprot/P07601 P07601]
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** [http://www.uniprot.org/uniprot/P06561 P06561]
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** [http://www.uniprot.org/uniprot/P56142 P56142]
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** [http://www.uniprot.org/uniprot/P06562 P06562]
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** [http://www.uniprot.org/uniprot/O27696 O27696]
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** [http://www.uniprot.org/uniprot/O28672 O28672]
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** [http://www.uniprot.org/uniprot/O66923 O66923]
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** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
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** [http://www.uniprot.org/uniprot/P43760 P43760]
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** [http://www.uniprot.org/uniprot/P34817 P34817]
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** [http://www.uniprot.org/uniprot/P34816 P34816]
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** [http://www.uniprot.org/uniprot/P17167 P17167]
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** [http://www.uniprot.org/uniprot/P17166 P17166]
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** [http://www.uniprot.org/uniprot/P19868 P19868]
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** [http://www.uniprot.org/uniprot/P19867 P19867]
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** [http://www.uniprot.org/uniprot/P16578 P16578]
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** [http://www.uniprot.org/uniprot/P43283 P43283]
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** [http://www.uniprot.org/uniprot/P43284 P43284]
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** [http://www.uniprot.org/uniprot/Q57011 Q57011]
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** [http://www.uniprot.org/uniprot/P31204 P31204]
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** [http://www.uniprot.org/uniprot/Q01998 Q01998]
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** [http://www.uniprot.org/uniprot/Q01997 Q01997]
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** [http://www.uniprot.org/uniprot/P34793 P34793]
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** [http://www.uniprot.org/uniprot/P42390 P42390]
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** [http://www.uniprot.org/uniprot/P50909 P50909]
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** [http://www.uniprot.org/uniprot/Q42529 Q42529]
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** [http://www.uniprot.org/uniprot/P51382 P51382]
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** [http://www.uniprot.org/uniprot/P77960 P77960]
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** [http://www.uniprot.org/uniprot/Q59992 Q59992]
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** [http://www.uniprot.org/uniprot/O22765 O22765]
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** [http://www.uniprot.org/uniprot/O04225 O04225]
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** [http://www.uniprot.org/uniprot/P25269 P25269]
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** [http://www.uniprot.org/uniprot/O64991 O64991]
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** [http://www.uniprot.org/uniprot/O05625 O05625]
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** [http://www.uniprot.org/uniprot/O13831 O13831]
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** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
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** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
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** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
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** [http://www.uniprot.org/uniprot/P00931 P00931]
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** [http://www.uniprot.org/uniprot/P00929 P00929]
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** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
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** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
 +
{{#set: common name=Tryptophan synthase, beta chain}}
 +
{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
 +
{{#set: ec number=EC-4.2.1.20}}
 +
{{#set: gene associated=Ec-00_008830|Ec-17_002680|Ec-24_004010|Ec-20_002800|Ec-24_002360|Ec-27_001950|Ec-06_007490|Ec-01_012080}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:12, 21 March 2018

Reaction TRYPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan synthase beta subunit-like PLP-dependent enzyme
    • Tryptophan synthase, beta chain
    • Tryptophan synthase (alpha / beta chains)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] + 1 L-serine[c] => 1 D-glyceraldehyde 3-phosphate[c] + 1 L-tryptophan[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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