Difference between revisions of "RXN-16042"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7163 RXN-7163] == * direction: ** LEFT-TO-RIGHT * common name: ** Inositol polyphosphate kinase...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7163 RXN-7163] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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* common name:
 
* common name:
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** TCA cycle IV (2-oxoglutarate decarboxylase)
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** Inositol polyphosphate kinase
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** inositol pentakisphosphate 2-kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.158 EC-2.7.1.158]
 
* Synonym(s):
 
* Synonym(s):
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** citric acid cycle
 
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** tricarboxylic acid cycle
 
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** Szent-Gyorgyi-Krebs cycle
 
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** Krebs cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[ACONITATEDEHYDR-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-1107]][c] '''=>''' 1 [[MI-HEXAKISPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Ec-16_001000]]
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** 1 ATP[c] '''+''' 1 D-myo-inositol 1,3,4,5,6-pentakisphosphate[c] '''=>''' 1 phytate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
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*** [[Ec-12_000170]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ACONITATEHYDR-RXN]]
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* Gene: [[Ec-16_003350]]
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** 2 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-12_000170]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-16_001000]]
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* Gene: [[Ec-18_000620]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* [[CITSYN-RXN]]
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== Pathways  ==
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** 0 associated gene:
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* [[PWY-6362]], 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6362 PWY-6362]
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** 1 reconstruction source(s) associated:
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6361]], 1D-myo-inositol hexakisphosphate biosynthesis I  (from Ins(1,4,5)P3): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6361 PWY-6361]
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* [[FUMHYDR-RXN]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-4661]], 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4661 PWY-4661]
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*** [[Ec-23_003460]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-25_001360]]
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* [[PWY-6369]], inositol pyrophosphates biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6369 PWY-6369]
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** 2 reconstruction source(s) associated:
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** '''1''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6554]], 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6554 PWY-6554]
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*** [[orthology-aragem]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[ISOCIT-CLEAV-RXN]]
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* [[PWY-6372]], 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6372 PWY-6372]
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** 1 associated gene(s):
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** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[Ec-12_007550]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[ISOCITDEH-RXN]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
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*** [[Ec-11_003080]]
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−
** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_006200]]
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*** [[Ec-02_003100]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[MALSYN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_003860]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-14971]]
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** 6 associated gene(s):
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*** [[Ec-07_007310]]
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*** [[Ec-27_006560]]
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*** [[Ec-07_002870]]
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*** [[Ec-11_000360]]
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*** [[Ec-05_003640]]
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*** [[Ec-21_003470]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7774 RXN-7774]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1117}}
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* RHEA:
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{{#set: taxonomic range=TAX-3035}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20313 20313]
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{{#set: taxonomic range=TAX-1224}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-201174}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05202 R05202]
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{{#set: common name=TCA cycle IV (2-oxoglutarate decarboxylase)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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{{#set: common name=Inositol polyphosphate kinase}}
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{{#set: reaction found=9}}
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{{#set: common name=inositol pentakisphosphate 2-kinase}}
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{{#set: total reaction=11}}
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{{#set: ec number=EC-2.7.1.158}}
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{{#set: completion rate=82.0}}
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{{#set: gene associated=Ec-16_003350|Ec-18_000620}}
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{{#set: in pathway=PWY-6362|PWY-6361|PWY-4661|PWY-6369|PWY-6554|PWY-6372}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:12, 21 March 2018

Reaction RXN-7163

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Inositol polyphosphate kinase
    • inositol pentakisphosphate 2-kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 D-myo-inositol 1,3,4,5,6-pentakisphosphate[c] => 1 phytate[c] + 1 H+[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6362, 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian): PWY-6362
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6361, 1D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3): PWY-6361
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-4661, 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza): PWY-4661
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6369, inositol pyrophosphates biosynthesis: PWY-6369
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6554, 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): PWY-6554
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6372, 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium): PWY-6372
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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