Difference between revisions of "Ec-28 003080"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16094 RXN-16094] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16094 RXN-16094] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.3.1.199 EC-2.3.1.199]
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** pyridoxal 5'-phosphate salvage II (plants)
 
* Synonym(s):
 
* Synonym(s):
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** vitamin B6 salvage (plants)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD-18]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CPD-17346]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
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* [[PMPOXI-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 linoleoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 3-oxo-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] '''+''' 1 CO2[c] '''+''' 1 coenzyme A[c]
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*** [[Ec-09_002030]]
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*** [[Ec-01_000340]]
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== Genes associated with this reaction  ==
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*** [[Ec-10_006030]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
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*** [[annotation-esiliculosus_genome]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PNKIN-RXN]]
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* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7725 PWY-7725]
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** 1 associated gene(s):
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[Ec-02_001230]]
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* [[PWY-6598]], sciadonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6598 PWY-6598]
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** 2 reconstruction source(s) associated:
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** [[orthology-aragem]]
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* Category: [[gap-filling]]
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* [[PNPOXI-RXN]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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** 3 associated gene(s):
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*** Tool: [[meneco]]
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*** [[Ec-01_000340]]
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**** Comment: [[added for gapfilling]]
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*** [[Ec-09_002030]]
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*** [[Ec-10_006030]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PYRAMKIN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-02_001230]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PYRIDOXKIN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-02_001230]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.74-RXN 3.1.3.74-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXINE-4-DEHYDROGENASE-RXN PYRIDOXINE-4-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14046 RXN-14046]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14181 RXN-14181]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: ec number=EC-2.3.1.199}}
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{{#set: common name=pyridoxal 5'-phosphate salvage II (plants)}}
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{{#set: in pathway=PWY-7601|PWY-7725|PWY-6598}}
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{{#set: common name=vitamin B6 salvage (plants)}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reaction found=5}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: total reaction=9}}
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{{#set: reconstruction tool=meneco}}
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{{#set: completion rate=56.0}}
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{{#set: reconstruction comment=added for gapfilling}}
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Revision as of 13:12, 21 March 2018

Pathway PWY-7204

  • taxonomic range:
  • common name:
    • pyridoxal 5'-phosphate salvage II (plants)
  • Synonym(s):
    • vitamin B6 salvage (plants)

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-28_003080&oldid=16610"