Difference between revisions of "RXN-13614"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10262 CPD-10262] == * smiles: ** CCCCCCCCCCCCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10262 CPD-10262] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=NBCCUIHOHUKBMK-ZDDAFBBHSA-J
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* common name:
 
* common name:
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** trans-octadec-2-enoyl-CoA
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** Glycyl-tRNA synthetase
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* molecular weight:
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** Anticodon-binding
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** 1027.953   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
 
* Synonym(s):
 
* Synonym(s):
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** trans-2,3-dihydro-stearenoyl-CoA
 
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** (2E)-octadecenoyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-9546]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 glycine[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-07_006780]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-07_006790]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-14_006280]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* RHEA:
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** [http://www.genome.jp/dbget-bin/www_bget?C16218 C16218]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=71412 71412]
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** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
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* BIGG : 1452075
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P41250 P41250]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244344 25244344]
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** [http://www.uniprot.org/uniprot/P54380 P54380]
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* HMDB : HMDB06529
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** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
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{{#set: smiles=CCCCCCCCCCCCCCCC=CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O}}
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** [http://www.uniprot.org/uniprot/P43822 P43822]
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{{#set: inchi key=InChIKey=NBCCUIHOHUKBMK-ZDDAFBBHSA-J}}
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** [http://www.uniprot.org/uniprot/P54381 P54381]
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{{#set: common name=trans-octadec-2-enoyl-CoA}}
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** [http://www.uniprot.org/uniprot/O51344 O51344]
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{{#set: molecular weight=1027.953    }}
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** [http://www.uniprot.org/uniprot/Q46371 Q46371]
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{{#set: common name=trans-2,3-dihydro-stearenoyl-CoA|(2E)-octadecenoyl-CoA}}
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** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
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{{#set: consumed by=RXN-9546}}
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** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
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** [http://www.uniprot.org/uniprot/P43821 P43821]
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** [http://www.uniprot.org/uniprot/O83678 O83678]
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** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
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** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
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** [http://www.uniprot.org/uniprot/P56454 P56454]
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** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
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** [http://www.uniprot.org/uniprot/Q57681 Q57681]
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** [http://www.uniprot.org/uniprot/P67029 P67029]
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** [http://www.uniprot.org/uniprot/O67081 O67081]
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** [http://www.uniprot.org/uniprot/O67898 O67898]
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** [http://www.uniprot.org/uniprot/O59235 O59235]
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** [http://www.uniprot.org/uniprot/P47493 P47493]
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** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
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** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
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** [http://www.uniprot.org/uniprot/P56453 P56453]
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** [http://www.uniprot.org/uniprot/O27874 O27874]
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** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
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** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
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** [http://www.uniprot.org/uniprot/P38088 P38088]
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** [http://www.uniprot.org/uniprot/Q06817 Q06817]
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** [http://www.uniprot.org/uniprot/Q51114 Q51114]
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** [http://www.uniprot.org/uniprot/P75425 P75425]
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** [http://www.uniprot.org/uniprot/Q55716 Q55716]
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** [http://www.uniprot.org/uniprot/P00960 P00960]
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** [http://www.uniprot.org/uniprot/P00961 P00961]
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** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Glycyl-tRNA synthetase}}
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{{#set: common name=Anticodon-binding}}
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{{#set: ec number=EC-6.1.1.14}}
 +
{{#set: gene associated=Ec-07_006780|Ec-07_006790|Ec-14_006280}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:14, 21 March 2018

Reaction GLYCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycyl-tRNA synthetase
    • Anticodon-binding
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 glycine[c] + 1 a tRNAgly[c] => 1 diphosphate[c] + 1 a glycyl-[tRNAgly][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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