Difference between revisions of "RXN-8342"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12056 RXN-12056] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** RNA-DNA hybrid ribonu...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12056 RXN-12056] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.4-RXN 3.1.26.4-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** RNA-DNA hybrid ribonuclease
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.5.1 EC-6.5.1]
+
** [http://enzyme.expasy.org/EC/3.1.26.4 EC-3.1.26.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[WATER]][c] '''+''' 2 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[2-phospho-ligated-tRNA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[AMP]][c] '''+''' 2 [[PROTON]][c]
+
** n [[WATER]][c] '''+''' 1 [[RNA-DNA-hybrids]][c] '''=>''' 1 [[DNA-Holder]][c] '''+''' n [[Nucleoside-Monophosphates]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 3' half-tRNA molecule with a hydroxyl on its 5' end[c] '''+''' 1 a 5' half-tRNA molecule with a 2',3' cyclic phosphate on its 3' end[c] '''+''' 1 H2O[c] '''+''' 2 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 a 2'-phospho-[ligated tRNA][c] '''+''' 1 ADP[c] '''+''' 1 AMP[c] '''+''' 2 H+[c]
+
** n H2O[c] '''+''' 1 a RNA-DNA hybrid[c] '''=>''' 1 DNA[c] '''+''' n a nucleoside 5'-monophosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-25_002560]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-17_003740]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-22_003570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6689]], tRNA splicing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P52975 P52975]
 +
** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
 +
** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
 +
** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
 +
** [http://www.uniprot.org/uniprot/P43807 P43807]
 +
** [http://www.uniprot.org/uniprot/P43808 P43808]
 +
** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
 +
** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
 +
** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
 +
** [http://www.uniprot.org/uniprot/Q57599 Q57599]
 +
** [http://www.uniprot.org/uniprot/O44114 O44114]
 +
** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
 +
** [http://www.uniprot.org/uniprot/P10442 P10442]
 +
** [http://www.uniprot.org/uniprot/P13319 P13319]
 +
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
 +
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
 +
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
 +
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
 +
** [http://www.uniprot.org/uniprot/O69014 O69014]
 +
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-6.5.1}}
+
{{#set: common name=RNA-DNA hybrid ribonuclease}}
−
{{#set: in pathway=PWY-6689}}
+
{{#set: ec number=EC-3.1.26.4}}
 +
{{#set: gene associated=Ec-25_002560|Ec-17_003740|Ec-22_003570}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:15, 21 March 2018

Reaction 3.1.26.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • RNA-DNA hybrid ribonuclease
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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