Difference between revisions of "RXN66-11"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** Calvin-Benson-Bassham cycle
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** Acetate-CoA ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.1 EC-6.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** photosynthetic dark reactions
 
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** photosynthetic CO2 fixation
 
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** reductive pentose phosphate pathway
 
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** Calvin cycle
 
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** carbon fixation
 
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** Calvin-Benson cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''13''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
−
* [[1.2.1.13-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ACET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[ACETYL-COA]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 acetate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 acetyl-CoA[c]
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*** [[annotation-esiliculosus_genome]]
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* [[1TRANSKETO-RXN]]
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== Genes associated with this reaction  ==
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** 1 associated gene(s):
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-20_002600]]
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* Gene: [[Ec-21_006210]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[2TRANSKETO-RXN]]
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* [[PWY66-161]], oxidative ethanol degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-161 PWY66-161]
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** 1 associated gene(s):
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-20_002600]]
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* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
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** 2 reconstruction source(s) associated:
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** '''2''' reactions found over '''3''' reactions in the full pathway
−
*** [[annotation-esiliculosus_genome]]
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* [[PWY66-162]], ethanol degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-162 PWY66-162]
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*** [[orthology-aragem]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[F16ALDOLASE-RXN]]
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* [[PWY0-1313]], acetate conversion to acetyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1313 PWY0-1313]
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** 4 associated gene(s):
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Ec-10_000880]]
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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*** [[Ec-10_004980]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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*** [[Ec-14_001680]]
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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*** [[Ec-01_008040]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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* [[F16BDEPHOS-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 7 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-12_004070]]
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*** [[Ec-04_004710]]
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*** [[Ec-14_005760]]
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*** [[Ec-06_004200]]
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*** [[Ec-17_003090]]
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*** [[Ec-21_001790]]
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*** [[Ec-22_000360]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Ec-12_004530]]
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*** [[Ec-01_001350]]
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*** [[Ec-08_002400]]
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*** [[Ec-12_004550]]
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*** [[Ec-21_005710]]
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*** [[Ec-21_004220]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSPHORIBULOKINASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-26_002450]]
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*** [[Ec-27_003910]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_007560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOBISALDOL-RXN]]
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** 1 associated gene(s):
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*** [[Ec-10_004980]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-22_000360]]
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*** [[Ec-21_001790]]
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*** [[Ec-04_004710]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Ec-08_000500]]
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*** [[Ec-23_004160]]
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*** [[Ec-03_002790]]
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*** [[Ec-24_000360]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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−
== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* PLANTCYC : CALVIN-PWY
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1117}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
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{{#set: taxonomic range=TAX-39119}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-38254}}
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** [http://www.uniprot.org/uniprot/P27095 P27095]
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{{#set: taxonomic range=TAX-29197}}
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** [http://www.uniprot.org/uniprot/P31638 P31638]
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{{#set: taxonomic range=TAX-38410}}
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** [http://www.uniprot.org/uniprot/Q12662 Q12662]
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{{#set: taxonomic range=TAX-5747}}
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** [http://www.uniprot.org/uniprot/P28812 P28812]
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{{#set: taxonomic range=TAX-2864}}
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** [http://www.uniprot.org/uniprot/P27550 P27550]
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{{#set: taxonomic range=TAX-877183}}
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** [http://www.uniprot.org/uniprot/O34613 O34613]
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{{#set: taxonomic range=TAX-2836}}
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** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
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{{#set: taxonomic range=TAX-3027}}
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** [http://www.uniprot.org/uniprot/P36333 P36333]
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{{#set: taxonomic range=TAX-2830}}
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** [http://www.uniprot.org/uniprot/Q01574 Q01574]
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{{#set: taxonomic range=TAX-2833}}
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** [http://www.uniprot.org/uniprot/P39062 P39062]
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{{#set: taxonomic range=TAX-3041}}
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** [http://www.uniprot.org/uniprot/Q01576 Q01576]
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.uniprot.org/uniprot/P52910 P52910]
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{{#set: taxonomic range=TAX-2763}}
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** [http://www.uniprot.org/uniprot/Q55404 Q55404]
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{{#set: taxonomic range=TAX-2870}}
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** [http://www.uniprot.org/uniprot/P16928 P16928]
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{{#set: taxonomic range=TAX-2825}}
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** [http://www.uniprot.org/uniprot/P16929 P16929]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/O68040 O68040]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P78773 P78773]
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{{#set: common name=Calvin-Benson-Bassham cycle}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
+
{{#set: common name=Acetate-CoA ligase}}
−
{{#set: reaction found=13}}
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{{#set: ec number=EC-6.2.1.1}}
−
{{#set: total reaction=13}}
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{{#set: gene associated=Ec-21_006210}}
−
{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY66-161|PWY66-21|PWY66-162|PWY0-1313|PWY-6672|PWY-7118}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:18, 21 March 2018

Reaction ACETATE--COA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Acetate-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 acetate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-161, oxidative ethanol degradation III: PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-21, ethanol degradation II: PWY66-21
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-162, ethanol degradation IV: PWY66-162
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1313, acetate conversion to acetyl-CoA: PWY0-1313
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6672, cis-genanyl-CoA degradation: PWY-6672
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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