Difference between revisions of "NADH-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7716 RXN-7716] == * direction: ** REVERSIBLE * common name: ** dihydrolipoamide dehydrogenase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7716 RXN-7716] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Beta-ketoacyl synthase, N-terminal
+
** dihydrolipoamide dehydrogenase
−
** Thiolase-like, subgroup
+
** 2-oxoglutarate dehydrogenase E1 component
−
** beta-ketoacyl synthase, partial
+
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.8.1.4 EC-1.8.1.4]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-DH-lipoyl]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
+
** 1 NAD+[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_000650]]
+
* Gene: [[Ec-21_002300]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***GO-TERM
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-27_004160]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-27_003480]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-25_000020]]
−
***EC-NUMBER
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-27_002090]]
+
*** Assignment: EC-NUMBER
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[aragem]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[Ec-12_000640]]
+
−
** ESILICULOSUS_GENOME
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
+
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
+
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
{{#set: common name=dihydrolipoamide dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
{{#set: common name=2-oxoglutarate dehydrogenase E1 component}}
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
{{#set: ec number=EC-1.8.1.4}}
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
{{#set: gene associated=Ec-21_002300|Ec-27_004160|Ec-25_000020}}
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
{{#set: in pathway=PWY-5084}}
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
+
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
+
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
+
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
+
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
+
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
+
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
+
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
+
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
+
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
+
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
+
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
+
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
+
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
+
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
+
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
+
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
+
−
{{#set: common name=Thiolase-like, subgroup}}
+
−
{{#set: common name=beta-ketoacyl synthase, partial}}
+
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-2.3.1.41}}
+
−
{{#set: gene associated=Ec-12_000650|Ec-27_003480|Ec-27_002090|Ec-12_000640}}
+
−
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 13:19, 21 March 2018

Reaction RXN-7716

  • direction:
    • REVERSIBLE
  • common name:
    • dihydrolipoamide dehydrogenase
    • 2-oxoglutarate dehydrogenase E1 component
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=NADH-DEHYDROGENASE-RXN&oldid=17636"