Difference between revisions of "PWY-5951"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14125 RXN-14125] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14125 RXN-14125] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/4.2.3 EC-4.2.3]
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** formaldehyde assimilation III (dihydroxyacetone cycle)
 
* Synonym(s):
 
* Synonym(s):
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** dihydroxyacetone cycle
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** xylulose-monophosphate cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''11''' reactions found over '''12''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD0-2189]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 4-phospho-hydroxy-L-threonine[c] '''=>''' 1 phosphate[c] '''+''' 1 4-hydroxy-L-threonine[c]
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*** [[Ec-20_002600]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-esiliculosus_genome]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* [[Ec-13_002160]]
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* [[2TRANSKETO-RXN]]
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** [[pantograph]]-[[aragem]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Ec-20_002600]]
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== Reconstruction information  ==
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** 2 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[orthology-aragem]]
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*** [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* [[F16ALDOLASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-10_004980]]
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*** [[Ec-01_008040]]
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*** [[Ec-10_000880]]
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*** [[Ec-14_001680]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Ec-06_004200]]
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*** [[Ec-04_004710]]
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*** [[Ec-17_003090]]
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*** [[Ec-12_004070]]
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*** [[Ec-14_005760]]
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*** [[Ec-22_000360]]
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*** [[Ec-21_001790]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 4 associated gene(s):
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*** [[Ec-25_003550]]
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*** [[Ec-19_001850]]
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*** [[Ec-19_003020]]
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*** [[Ec-08_000500]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[GLYCERONE-KINASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-18_002130]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Ec-12_004530]]
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*** [[Ec-21_005710]]
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*** [[Ec-21_004220]]
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*** [[Ec-08_002400]]
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*** [[Ec-12_004550]]
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*** [[Ec-01_001350]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
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*** [[Ec-06_003940]]
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*** [[Ec-01_002780]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Ec-08_000500]]
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*** [[Ec-24_000360]]
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*** [[Ec-03_002790]]
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*** [[Ec-23_004160]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30662 30662]
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{{#set: common name=formaldehyde assimilation III (dihydroxyacetone cycle)}}
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* LIGAND-RXN:
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{{#set: common name=dihydroxyacetone cycle|xylulose-monophosphate cycle}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05086 R05086]
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{{#set: reaction found=11}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=12}}
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{{#set: ec number=EC-4.2.3}}
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{{#set: completion rate=92.0}}
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{{#set: gene associated=Ec-13_002160}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 13:20, 21 March 2018

Pathway P185-PWY

  • taxonomic range:
  • common name:
    • formaldehyde assimilation III (dihydroxyacetone cycle)
  • Synonym(s):
    • dihydroxyacetone cycle
    • xylulose-monophosphate cycle

Reaction(s) found

11 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5951&oldid=17741"