Difference between revisions of "RXN-5781"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6352 PWY-6352] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** long c...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6352 PWY-6352] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-phosphoinositide biosynthesis
+
** octanoyl-CoA ligase
 +
** long chain acyl-coA synthetase
 +
** long chain acyl-CoA synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** phosphatidylinositol-3,4-bisphosphate biosynthesis
 
−
** phosphatidylinositol 3-phosphate biosynthesis
 
−
** phosphatidylinositol-3,4,5-triphosphate biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''8''' reactions found over '''8''' reactions in the full pathway
+
* With identifiers:
−
* [[1-PHOSPHATIDYLINOSITOL-3-KINASE-RXN]]
+
** 1 [[CPD-195]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[PPI]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Ec-04_003810]]
+
** 1 octanoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 octanoyl-CoA[c] '''+''' 1 diphosphate[c]
−
*** [[Ec-12_006380]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[annotation-esiliculosus_genome]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[1-PHOSPHATIDYLINOSITOL-KINASE-RXN]]
+
* Gene: [[Ec-02_006430]]
−
** 1 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-06_009510]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Ec-12_008720]]
−
*** [[annotation-esiliculosus_genome]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[2.7.1.150-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 0 associated gene:
+
* Gene: [[Ec-03_003710]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[annotation-esiliculosus_genome]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[2.7.1.153-RXN]]
+
* Gene: [[Ec-01_001560]]
−
** 0 associated gene:
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[annotation-esiliculosus_genome]]
+
== Pathways  ==
−
* [[2.7.1.154-RXN]]
+
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
−
** 0 associated gene:
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
** 1 reconstruction source(s) associated:
+
* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
−
*** [[annotation-esiliculosus_genome]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[2.7.1.68-RXN]]
+
== Reconstruction information  ==
−
** 5 associated gene(s):
+
* Category: [[annotation]]
−
*** [[Ec-02_002790]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-19_000710]]
+
*** Tool: [[pathwaytools]]
−
*** [[Ec-04_001040]]
+
−
*** [[Ec-05_001250]]
+
−
*** [[Ec-13_001240]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
* [[2.7.8.11-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-23_001230]]
+
−
*** [[Ec-18_001300]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[RXN-10938]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2759}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-phosphoinositide biosynthesis}}
+
{{#set: common name=octanoyl-CoA ligase}}
−
{{#set: common name=phosphatidylinositol-3,4-bisphosphate biosynthesis|phosphatidylinositol 3-phosphate biosynthesis|phosphatidylinositol-3,4,5-triphosphate biosynthesis}}
+
{{#set: common name=long chain acyl-coA synthetase}}
−
{{#set: reaction found=8}}
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
{{#set: total reaction=8}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: completion rate=100.0}}
+
{{#set: gene associated=Ec-02_006430|Ec-12_008720|Ec-03_003710|Ec-01_001560}}
 +
{{#set: in pathway=PWY-6920|P221-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:22, 21 March 2018

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 octanoate[c] + 1 ATP[c] + 1 coenzyme A[c] => 1 AMP[c] + 1 octanoyl-CoA[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway
  • P221-PWY, octane oxidation: P221-PWY
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-5781&oldid=17983"