Difference between revisions of "Ec-13 002040"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MG+2 MG+2] == * smiles: ** [Mg++] * inchi key: ** InChIKey=JLVVSXFLKOJNIY-UHFFFAOYSA-N * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen oxidase,...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=MG+2 MG+2] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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* smiles:
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* direction:
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** [Mg++]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=JLVVSXFLKOJNIY-UHFFFAOYSA-N
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* common name:
 
* common name:
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** Mg2+
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** coproporphyrinogen oxidase, putative chloroplast precursor
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* molecular weight:
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** coproporphyrinogen oxidase (aerobic), putative chloroplast precursor
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** 24.305   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
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** magnesium
 
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** Mg+2
 
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** Mg++
 
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** magnesium ion
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN1F-20]]
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* With identifiers:
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* [[TransportSeed_MG+2]]
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** 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[WATER]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[TransportSeed_MG+2]]
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** 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c] '''+''' 2 H2O[c]
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== Reaction(s) of unknown directionality ==
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* [[ExchangeSeed_MG+2]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-08_001470]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-19_005390]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* DRUGBANK : DB01378
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=888 888]
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* LIGAND-RXN:
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* HMDB : HMDB00547
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C00305 C00305]
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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** [http://www.chemspider.com/Chemical-Structure.865.html 865]
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=18420 18420]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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* BIGG : 1787372
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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{{#set: smiles=[Mg++]}}
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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{{#set: inchi key=InChIKey=JLVVSXFLKOJNIY-UHFFFAOYSA-N}}
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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{{#set: common name=Mg2+}}
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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{{#set: molecular weight=24.305    }}
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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{{#set: common name=magnesium|Mg+2|Mg++|magnesium ion}}
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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{{#set: consumed by=RXN1F-20|TransportSeed_MG+2}}
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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{{#set: produced by=TransportSeed_MG+2}}
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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{{#set: reversible reaction associated=ExchangeSeed_MG+2}}
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen oxidase, putative chloroplast precursor}}
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{{#set: common name=coproporphyrinogen oxidase (aerobic), putative chloroplast precursor}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Ec-08_001470|Ec-19_005390}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:22, 21 March 2018

Reaction RXN0-1461

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen oxidase, putative chloroplast precursor
    • coproporphyrinogen oxidase (aerobic), putative chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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